Ictalurus punctatus (channel catfish): 108273866
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Entry
108273866 CDS
T04658
Name
(RefSeq) vinculin-like
KO
K05700
vinculin
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04520
Adherens junction
ipu04810
Regulation of actin cytoskeleton
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108273866
04520 Adherens junction
108273866
09142 Cell motility
04820 Cytoskeleton in muscle cells
108273866
04810 Regulation of actin cytoskeleton
108273866
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108273866
04147 Exosome [BR:
ipu04147
]
108273866
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108273866
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108273866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Talin_R4
Mob_Pre
Motif
Other DBs
NCBI-GeneID:
108273866
NCBI-ProteinID:
XP_053541347
Ensembl:
ENSIPUG00000001897
UniProt:
A0A9F7RRT1
LinkDB
All DBs
Position
13:28750959..28777582
Genome browser
AA seq
1067 aa
AA seq
DB search
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLCAPVAAVQAAVSNLVRVGKE
TVQTTEDAIMKRDMPPAFIKVENACTKLVQAAQMLKADPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVESMEDLITYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISGIKIFVTMKMTQSAGMDEAVKNRNFTVEKMSAE
INEIIRVLQLTSWDEDAWASKDTETMKRALALIDSKLAQAKNWLKDPNAQPGEAGEQAVR
QILDEAGKVGELCVGNERKEILDTTKTLGHLTDQVADLRARGSGTSPVAIQKAQQVAQGL
DVLSGKVANAADKLEAMTNSKHTLAKKAEAAQAWLADPASSPEGEEHVKAVLAEAQNIAA
LCEDPRDYNDILRNVNEISALTGKLSQLRKAGKGDTPEARALAKQIATALQNLQSKTNRA
VANTRPAKAAVHLEGKMEQAQRWIDNPTMEDGGVGQAAIRGLVAEGRRLAHVLPGSQRAE
LMGKCEQVEQLMGQLAELSARGQADTPQAQALAQQLQHALKDLKGKMQEAMTQEVSDIFS
DTTTPIKLLAVAATAPRGTPNREEMFEERAAGFETHAARLGATADKAAAVGTANRSTVEG
IHAAVKSARDLTPQVVSAARILLKNPGNQAAHEHFETMKNQWIDNVEKMTTLVDEAIDTK
SLMDASEEAIKHDLEKCHVAMTNHQPQMLVAGATSIARRANRIVLVAKREVENSEEPKFR
EALREAANELSASISPMVMGAKGVANNIQDPTLQKGFMDSGYRILASVAKVREAFQPQEP
DFPPPPPPDLQQLSIHDEGAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQRAGEMVSEPMM
VAARQLHEEARKWSSKGNDIIGAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASD
EVTLLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQA
TEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLHWVRKTPWYQ
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgttccacaccaagaccatagagagcatcctggagcccgtggcccagcagatc
tctcacctggtcatcatgcacgaggagggcgaggtggacgggaaggcgatcccggatctg
tgcgccccggtggcggcggtgcaggctgcagtcagtaacctggtccgggtggggaaggag
acggtgcagactacggaggatgccatcatgaaaagagacatgcctcctgcatttataaaa
gtggagaacgcgtgcactaagctggtccaggcggcccagatgctgaaggccgacccgtac
tccgtcccggcgcgggattatctcattgatggctcacgcggcattctatcaggaacctcc
gaccttctgctcaccttcgacgaggctgaggtgcgtaaaatcatccgcgtgtgtaaaggc
attctggagtatctgaccgtcgctgaagtggtagagagcatggaggatctcatcacgtac
accaagaacctgggaccaggcatgaccaagatggccaagatgattgacgagcggcagcag
gagctgactcatcaggagcaccgcgtcatgctcgttaactccatgaacacggtgaaggag
ctgctgcccgtcctcatctcaggaataaagatctttgtgacgatgaagatgactcagagt
gcagggatggatgaggcggtgaagaacaggaacttcactgtggagaagatgagcgctgag
atcaacgagatcatccgagtgctccagctcacatcctgggacgaagacgcctgggccagc
aaggacactgagaccatgaagcgagcgctggctctcatcgactctaaactggctcaggca
aagaactggctcaaggaccccaatgcacagcctggagaggctggggagcaggcggtcagg
cagatcctggatgaagcagggaaagtgggtgaactgtgtgtgggtaatgagaggaaagag
attctggacacgaccaaaaccctgggacacctcactgaccaggtcgcagatctgcgtgcc
aggggttctggtactagtcctgtggccattcagaaagcgcagcaggttgctcagggcctg
gacgtgctgtctgggaaagtagcgaatgcagcagataaactggaggccatgaccaactcc
aaacacacacttgccaagaaagcagaggcagcacaggcctggctagctgaccccgcctcc
agcccagagggggaggagcatgtgaaggctgttctcgccgaggctcagaacatcgcagct
ctgtgtgaggatccgcgtgattacaatgacatcctgcgcaacgtgaacgaaatctccgct
ctcactggcaaactctcgcaactccgcaaagcaggtaaaggtgatacccctgaggctcgt
gccctggctaagcagatcgccacagctctgcagaacctgcagtccaaaacgaaccgcgct
gtagcgaacactcggccagccaaagcggctgttcacctggagggtaagatggagcaggcg
cagcgctggatagacaaccccaccatggaggacggaggagtgggtcaagctgcaattcgt
gggctggttgctgaggggcgtcgtcttgcccacgtgttacctggctcccagagggcggag
cttatggggaaatgtgagcaggtggagcagctgatgggacaactggctgaactgagtgct
cgaggacaggcggatacaccgcaggcacaggcactcgctcagcagctccagcacgcactg
aaggatcttaaaggtaaaatgcaggaggccatgacacaggaagtgtccgacatcttcagt
gacacgacgactccgataaagctgctggccgtagctgcgaccgctccacgtggcaccccc
aaccgagaggagatgtttgaggagcgagctgcaggctttgagactcacgccgcgagactc
ggggcaacggcagacaaagcagctgcagtgggaacggccaatcgcagtacagtggaggga
atccatgctgccgtcaagtccgccagggacctcacgcctcaggtggtgtctgctgctcgc
atcctgctgaagaaccccggcaaccaggctgcacacgagcacttcgagaccatgaagaac
cagtggatcgataatgttgagaaaatgactactctggtggatgaggcgatagacaccaag
tccctgatggacgcatcagaggaagccattaaacatgacctggagaagtgtcacgtggcc
atgaccaatcaccagcctcagatgctggttgccggggcgacgagtatagcgcgcagggcc
aatcgtatcgtgctggtggcgaagcgggaagtggaaaactccgaggagcccaaattcaga
gaggcgctgcgtgaggcggccaatgagctcagtgcctctatatcacctatggtgatgggg
gccaagggtgtggccaacaacatacaggacccgactctacagaaaggctttatggactcg
ggttacaggattttggcgtcagtagctaaagtgcgtgaagcgtttcagcctcaggagcct
gacttccctcctcctcctcctccagacctccagcagctcagtattcacgatgagggcgcc
cccccgaagccccccctgcctgagggtgaagtcccgcccccacggcctccgcctcccgag
gagaaagatgaggagttcccggagcagagggccggagagatggtcagcgagcccatgatg
gtggcggcgcggcagttgcacgaggaggcccgcaagtggtctagcaagggtaatgacatc
atcggcgcggcgaagcgcatggccctgctgatggcggaaatgtctcggctggtgcgaggg
ggcagcggaaacaagcgcgctctcatccagtgtgctaaagacatcgccaaggcttcggac
gaggtgacgctgctcgctaaggaggtggctaagcagtgcacggataaacgcatccgaacc
aacctgctgcaggtgtgtgagcgtatccccaccatcagcactcagctgaagattctctcc
acggtgaaggccaccatgttgggacgtaccaacatcagcgaggaggagtccgagcaggcg
acggagatgttggtccacaacgctcagaatctgatgcagtcggtgaaggagacggtacgc
gaggccgaggcggcgtccatcaagatccgcacggatgccggcttcacgctgcactgggtc
cgcaagaccccctggtaccagtga
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