Ictalurus punctatus (channel catfish): 108279793
Help
Entry
108279793 CDS
T04658
Name
(RefSeq) smoothened homolog
KO
K06226
smoothened
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108279793
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ipu04030
]
108279793
G protein-coupled receptors [BR:
ipu04030
]
Frizzled / Smoothened family
108279793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Frizzled
Fz
Dicty_CAR
Motif
Other DBs
NCBI-GeneID:
108279793
NCBI-ProteinID:
XP_017349767
Ensembl:
ENSIPUG00000023084
UniProt:
A0A2D0T4D0
LinkDB
All DBs
Position
19:complement(22808467..22822617)
Genome browser
AA seq
841 aa
AA seq
DB search
MNPKVQIVVVLLLSLCKMSSSSIVGRFGMLWVWVSTVMVSQAVMLHKNESMFNDFCKKTT
TCEVLKYNTCLGSPLPYTHTSLVLAEDSETQEEAFEKLAMWSGLRNAPRCWAVIQPLLCA
VYMPKCENGKVELPSQTLCQATRRPCSIVEQERGWPNFLKCENTDKFPLGCQNEVQKLKF
NTSGQCEAPLVKTDIQASWYKDVEGCGIQCDNPLFTEEEHSDMHDYIAIFGSITLLCTFF
TLATFLADWKNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARKEIVCKSDNTMRLGEPS
STETLSCVIIFIIVYYSLMSGVIWFVMLTYAWHTSFKALGTTHQPLSGKTSYFHLVTWSI
PFILTVAILAIAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGVVLTVGGYFLVRGVMTLF
SIKSNHPGLLSEKAASKINETMLRLGIFGFLAFGFVFITFGCHFYDFFNQAEWERSFREF
VLCEANVTIAHQTKKPIPECTIKNRPSLLVEKINLFSMFGTGIAMSTWVWTKATILIWKR
TWCRIIGRSDDEPKRIKKSKMIAKAFSKRKELQMDPEKELSFSMHTVSHEGPVAGINFEL
NEPSMEMSSAWAQHVTKMVARRGAILPQDISVTPTGTPVPPPEERNKLWMVEADISPEMM
KRKKKKKKRKKEVRSVAPVEEGVNPRHREFGASAVPRLPKLPAHRSLVANLWERQRQQEE
NVLPGSFPEFRPSCPIPYQERYGGLGYVSSNQPSRELGCNLSNPLTLSQYEGRGQLKQPA
WQSNGHNGVFRYSGHEMPSSVGGGRTGFTAPRSEGRKPVTAPIHSRTNLMEAELMDADSD
F
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaaaagtccagattgttgtagtattgttgttgtcgctgtgtaaaatgtcctcc
agctccatcgttggtcgatttgggatgctttgggtttgggtcagcactgtgatggtgagc
caggccgtgatgttacacaaaaacgagagcatgttcaacgacttttgcaagaaaacgacg
acgtgtgaagtgttgaagtacaatacgtgtctgggttcgcctctgccgtacacgcacacg
tctctggtgctggctgaagactccgagacacaagaagaagcttttgagaagttggccatg
tggtctggtttgagaaatgctcctcgctgctgggcggtcattcagcctttactgtgtgct
gtttacatgcccaagtgtgagaacggcaaagtggagctgcccagccagaccctttgccag
gcgacccgccgaccctgcagcatagtggaacaggagcgagggtggcccaacttcctgaag
tgtgagaacacggacaagtttcctctcggttgtcagaacgaggtgcagaaactcaaattc
aatacatcaggacaatgtgaagctcctctggtaaaaaccgacatccaggccagctggtac
aaggacgtggagggctgcggcattcagtgtgacaatcccctcttcacggaggaggaacac
tccgacatgcacgactacatcgccatcttcggttcaatcaccctgctttgcactttcttt
acattagcgacgtttcttgccgattggaaaaattccaatcgctacccggctgtaatcctc
ttctatgtcaatgcctgcttcttcgtgggtagcattgggtggctcgctcagttcatggac
ggtgcgcgcaaagagatcgtgtgcaaaagcgacaacaccatgcggcttggagagccctca
tcgacagagacgctttcgtgtgttatcattttcatcatcgtctactactctttgatgtca
ggggtcatctggtttgttatgctcacctacgcctggcacacatctttcaaagccctgggc
actacgcaccaacctctgtctggaaagacgtcatacttccacctggtcacatggtccatc
ccgtttatcctcacagtggctatactggccattgcacaggtcgatggagactctgttagt
ggaatctgctttgttggctacaaaaactacagataccgcgctgggtttgttcttgctcca
atcggcgtggtactcactgttggtggctatttccttgtaagaggtgtcatgacactattt
tctatcaaaagtaaccatccaggactgctgagtgaaaaagcagcaagcaaaatcaacgag
accatgctgagacttggcatatttggttttcttgcatttggttttgttttcatcactttt
ggatgccatttctacgacttcttcaaccaggcggaatgggaaaggagctttagggaattt
gttctgtgtgaagctaatgtcactatagctcatcagaccaagaaaccgatcccggagtgc
accattaaaaaccggcccagtctgctggtggagaagatcaatctgttctctatgtttggt
accggcattgccatgagcacatgggtatggaccaaagccactattctcatttggaagcgc
acctggtgtaggataattggacgcagtgacgatgagccaaagcgcatcaagaagagcaag
atgattgccaaagcgttctcgaagcgaaaggaactccaaatggacccggaaaaagaattg
tccttcagcatgcacacggtgtcccatgagggaccggtggcgggtattaactttgaactg
aatgagccgtccatggaaatgtcctctgcatgggcccagcacgtgacaaagatggtggca
cgaagaggtgccattttacctcaggacatctcagttacacccactgggacacctgtgccg
cctccagaagagcgaaacaaattgtggatggtcgaagccgatatctcccctgagatgatg
aaacgtaagaagaaaaagaaaaagaggaagaaggaggtgcgttcagtagcgcctgttgaa
gagggtgtgaatccccgtcacagagagttcggtgccagcgctgtccctcgcctccccaag
ctcccggcgcatcgcagcctcgtggctaacctgtgggagcggcaacggcagcaagaggag
aacgtccttccaggttccttcccagaattccgaccttcctgtcccattccataccaggag
agatacggagggcttggctatgtttcatccaaccagcctagcagggagctgggctgtaac
ctctccaacccactgacgctaagccagtacgagggacgaggtcagttgaaacaaccggcc
tggcaatctaatggacataatggagtgttccgctattcaggtcacgagatgccttcgtca
gtgggtggtggcaggacaggctttacagcacctcgatcagagggcaggaaaccagtcaca
gcaccaatccactctagaaccaatctaatggaggcagaactcatggatgctgactctgat
ttttga
DBGET
integrated database retrieval system