Ketobacter alkanivorans: Kalk_06055
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Entry
Kalk_06055 CDS
T05294
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kalk_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kak03019
]
Kalk_06055
Enzymes [BR:
kak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kalk_06055
Messenger RNA biogenesis [BR:
kak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kalk_06055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUM12010
UniProt:
A0A2K9LIE3
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All DBs
Position
complement(1430065..1431402)
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AA seq
445 aa
AA seq
DB search
MSFSSLGLSAPILKAVAEQGYDTPSPIQAKAIPVVLEGKDVMAAAQTGTGKTAGFTLPIL
ERLSKGQRAQPNQVRCLILTPTRELAAQVAESVALYGANLPLSSAVVFGGVKINPQMMRL
RKGVDILVATPGRLMDLYNQNAVKFKQLEILVLDEADRMLDMGFIHDIRRIISLLPKQRQ
TMMFSATFSNEIRTLAKTLVNNPVEISVSPPNTTTSLVEQLVCPVDKKQKPNLLVELIRK
NQWGQVLVFTKTKRGANQLSRHLEVEGITSSAIHGNKTQSARTRALADFKKGEVRVLVAT
DIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGASGKAVSLVCADEAKLLFDIER
LIQRELDREIVPGFEPVHALESRPVRQPSRNKKPKKPRPPRPEHKDGQRSADNATGHQPP
AKKPGRKPVRKPAAGGNKPYANFKK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctctttgggcctttctgcccccatcctgaaagctgtggccgaacagggt
tatgacaccccatccccaatccaggccaaagccataccggtggttttggaaggtaaagat
gtaatggcggcggctcagacaggaaccggtaaaaccgccggtttcacgttgccaatttta
gagcgtttgtcgaaggggcagcgagcccagcccaatcaggtcagatgcctgatcttaacc
cccactcgcgaattggcggcccaggtggccgaaagcgttgccctttatggtgccaatttg
cctttaagttcagcggtggtatttggaggggtaaagatcaatccgcaaatgatgcggttg
cgtaagggggtggatattttagtggccacgcccggccggttaatggatctgtataatcag
aatgcggtgaaattcaagcagttggaaatactggtgctggatgaagcggaccgcatgctg
gacatggggttcattcatgacattcgcagaatcatttcgctgttgcccaaacaacgtcag
accatgatgttctctgccaccttttccaacgaaatccgaacgctggccaaaaccttggtg
aataaccctgtggagatttcggtgtcgccccccaataccaccaccagtttggttgagcag
ttggtgtgcccggtggacaagaaacaaaaacctaatctgttggtggaattgattcgtaag
aatcagtggggacaggtgctggtgtttactaaaaccaaacggggtgctaaccagttaagt
cgtcatctggaggtggagggcatcacgtcatcggcgatccacggcaataaaacccagtcg
gcccgcacgagggcgttggcggatttcaaaaagggtgaagtgcgtgttcttgtggccacg
gatattgcggcgcggggtttggatattgatcaattgccacaggtggttaacttcgaatta
ccgaatgtcccggaggattatgtacaccgtataggtcgcaccgggcgtgcgggagccagc
ggcaaagcggtttcgttggtgtgtgcagacgaagccaagctgttgtttgatattgagcgg
ttgattcaacgtgaactggatcgagagattgtgcctggctttgagccggttcatgccttg
gagtcccggcctgtacgtcagccttcccgcaacaagaaacccaaaaagccgaggccgccg
cgcccagagcacaaggatggccagcgttctgccgataacgctaccggacatcagccgcct
gcgaaaaagccgggtcgaaagccggtgcgcaagcctgcggcaggtggtaataaaccctac
gccaactttaaaaagtaa
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