Kryptolebias marmoratus (mangrove rivulus): 108242963
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Entry
108242963 CDS
T05608
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108242963 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108242963 (parn)
Enzymes [BR:
kmr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108242963 (parn)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108242963 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
108242963
NCBI-ProteinID:
XP_017283654
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All DBs
Position
LG3:18005146..18013259
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AA seq
683 aa
AA seq
DB search
MEVTRKNFKDSLSTVCSAIDEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLMFQFGLCTFKYDQTKSKYITKPFNFYVFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGLGTPSFISPSSSKVPAHVPDEQKD
FVNKVVEKVEALFSNNEKTLDLEPCTGFQRKLVYQTLSWKFPKGLHVETLETEKKERYIQ
VSKVDEEEKKKREQQKLEREQEELNDAVGFSRVIHAISKSSKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKDVTMCVFPRLLDTKLMASTQPFKELISNTSLAELEKQVKESPFKPPKV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANHLGSFLTPPKSYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKHQEKDKLGQTAKTWGEDSWLKPHY
SSSAGFGYRGRKRSISPLQGEQGTEEAPISDPWNHYSFPDSTGNKKMKFDGVKAYASERA
NVEAVESKTSEGWLKITEASYSAESSPAPDEKSPEGTDPGSRADGTSTWQQPPTASAKKG
QKNKKKKSEATESTSLFEVPEVW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacgcgcaaaaattttaaagacagtttgagcacggtgtgcagcgccatagac
gaggctgactttcttgccatcgatggagaattttcagggataagtgacggtcccaatgtt
agtgcgctaaccaacgggctggatacaccggaggaacgatacacgaagcttaaaaagcat
tctatggactttctcatgttccagtttggattatgtacgtttaagtatgaccagacgaag
tcaaagtatatcacaaagccttttaatttttatgtattccctaaaccatttaataggaca
tctccagatataaagtttatctgtcaaagttccagtattgatttcctcgccagtcaggga
tttgacttcaacaaggtgttctgtcacggaatcccgtacctaaatcaggaggaggaagct
cagctgagagagcagacagaagaaaggagaaatcaacatgctaatggtttagggacccca
tctttcatctccccgtcatcctccaaagtccctgcacacgtacctgatgaacagaaagac
tttgttaataaagtggtggaaaaggtggaggcgctcttcagtaacaatgagaagactttg
gacttggagccatgtactggtttccagagaaagctggtctaccagacactgagctggaag
tttcccaaagggcttcatgtggaaaccttggaaacagagaagaaggagcggtacattcag
gtcagtaaagttgacgaagaggagaagaagaagagggaacagcagaaactggagagggag
caggaggaactaaatgatgctgtcggcttctccagagtcatccatgccatttctaaatcc
agtaaacttgtggttggccacaacatgcttttagatgtgatgcacacaatccaccagttc
tactgccctttgcctgaggatcttcaagactttaaagatgttacgatgtgtgttttccca
agacttttagacacaaaactgatggcgtctactcagccatttaaggagctgatctctaac
acgtctctggcagagctggagaaacaagtaaaggagagcccctttaagccgccaaaagtt
gaaacggcagaggggttccccagttacgacacggcccaggagcagctccatgaggcagga
tatgacgcctacatcaccggtctgtgtttcatctccatggccaaccatctgggttctttc
ttgacgccaccaaaatcctacatctctgctcggtccaagctaattgaacctttcttcaac
aagctcttccttatgaggataattgacataccctacctcaatatcacagggccagatttg
caacccaaaagagaccacgtcctgtatgtcaccttccctaaagagtggaagactagtgac
ctctaccagctcttcagtgccttcggtaacatccaggtgtcttggattgatgacacgtca
gcttttgtgtccctcagtcagacggaccaggtgcagatagctatgaacaccagccgctat
gcagagagctacaggatccagacatatgcagagtacatccagggtaaacatcaggagaaa
gacaagcttggccagacagccaaaacctggggtgaggacagctggctgaaacctcactac
tcctcctccgctgggtttggataccgcgggaggaagcgcagcatcagtccccttcaagga
gagcagggaactgaagaggctccaatttcagatccctggaatcactactccttcccagac
agcacaggaaacaagaagatgaaattcgatggtgtgaaagcatatgcaagtgaacgggcc
aacgttgaagccgttgagagcaaaacatcagaggggtggctaaagataacggaggcatcc
tattcagccgagtcaagtccggccccagacgagaaaagtcctgaaggcacggatccaggc
agtcgtgctgatgggacaagcacttggcagcaacccccaacggcctcagcaaagaaaggt
caaaagaacaagaaaaagaagtctgaagcgactgaatcaacatcgttgttcgaagtccca
gaagtctggtag
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