Klebsiella variicola 342: KPK_5089
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Entry
KPK_5089 CDS
T00772
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kpe
Klebsiella variicola 342
Pathway
kpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPK_5089 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpe03019
]
KPK_5089 (rnr)
03016 Transfer RNA biogenesis [BR:
kpe03016
]
KPK_5089 (rnr)
Enzymes [BR:
kpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KPK_5089 (rnr)
Messenger RNA biogenesis [BR:
kpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPK_5089 (rnr)
Transfer RNA biogenesis [BR:
kpe03016
]
Prokaryotic type
tRNA degradation factors
KPK_5089 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
MetOD2
TFIIE_beta
Rho_RNA_bind
OB_Dis3
Sucrose_synth
Motif
Other DBs
NCBI-ProteinID:
ACI11594
UniProt:
B5Y323
LinkDB
All DBs
Position
complement(5140649..5143087)
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AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAIELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EDIMGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVSGLKEQVPEEAKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREHYAPLVKHIEELHNLYKVLESA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPSTEAITSFRTVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGQHCSMTERRADEATREVSDWLKCDFMQDQVGNTFSGVIASVTGFGFF
VRLNDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKSTSGKPGGRRRQVGKQVNFEPDSAFRKEKDQAKAKP
KGEKKAKKPSAKTQKIAAATKAKRAAKKKIAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattccaggaacgcgaagctgagaagtacgcgaatcccatcccgagc
cgggaatttatcctcgaacatttaaccaaacgggaaaagcctgccagccgcgatgagctg
gccatcgagttgaatattgagggcgaagaacaaatagaagcgctgcgccgccgcctgcgc
gcgatggagcgcgacggtcagctggtcttcacacgccgccagtgctatgcgctgccggag
cgtcttgatctcctcaaaggtaccgttattggccaccgtgatggctatggattcctgcgc
gttgaagggcgcaaggacgatctgtatctgtcgtcagagcagatgaaaacctgtattcac
ggtgaccaggtgctggcccagccgctgggtgcggaccgtaagggccgccgcgaggcgcgc
atcgttcgtgtgctggtaccgaaaaccagccagattgttggccgctacttcaccgacgct
ggcgtcggcttcgtcgttccggacgacagtcgcctgagtttcgatatcttgatcccgcca
gaagatattatgggcgcgcggatgggctacgtggtggtggtcgaactgacccagcgccca
acccgccgcaccaaagcggtcgggaaaatcgtcgaagtactgggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgtacccatgaaattccttacgtctggccgccggcg
gtggaaaaacaggtttccggcctcaaagagcaggtgccggaagaggcgaaagccggacgc
gtggatctgcgctctctgccgctggtcactattgatggcgaagatgcccgcgacttcgat
gacgcggtgtactgcgagaagaaacgcggcggcggctggcgtctgtgggtggctatcgcc
gacgtgagctactatgtgcgccccggtacgccgctggacggtgaagcgcgtagccgcggg
acgtcggtctacttcccgtcgcaggtggtgccgatgctgccggaagtgctgtcgaatggc
ctgtgctcgctgaacccgcaggtcgatcgcctgtgtatggtgtgcgagatgacgatttcg
tcaaaaggccgcctgaccggctttaagttctatgaagcggtgatgagttcacatgctcgc
ctgacctacaccaaagtgtggcatatgctgcagggcgatcaggagctgcgcgaacactac
gcgccgctggtgaagcatattgaagagctgcataacctctacaaagtgctggagagcgcc
cgcgaagagcgcggcggtatctcatttgaaagtgaagaagctaaattcatcttcaatgcc
gaacgccgtattgagcgtatcgaacagactcagcgtaacgatgcgcataagctgattgaa
gagtgtatgatcctggcgaacatctccgccgcgcgtttcgttgagaaagcgcaggaaccg
gcactgttccgtatccacgataagccaagcaccgaagcgattacctcgttccgtaccgtg
ctggctgagctgggactggagctgccgggcggcaacaagccggagccgcgcgattacgcc
gaactgttgacctccattgccgatcgtccggatgccgaaatgctgcaaacgatgctcctg
cgctccatgaagcaggcggtctacgatccggaaaaccgtggccactttggcctggcactg
cagtcatacgcccacttcacctcgccgattcgccgctacccggatctgtcgctgcaccgc
gccatcaagtatctactggcaaaagagcagggacataaagggaatagcaccgagaccggc
ggctggcactacagcatggaagagatgctccagctgggccagcactgttcgatgaccgag
cgccgcgccgacgaagcgacgcgtgaagtgtccgactggctgaagtgcgacttcatgcag
gatcaggtgggcaacaccttctccggtgtcatcgccagcgtgaccggctttggcttcttt
gtccgcctgaacgatctgtttatcgatggtctggtgcatgtctcctccctggataacgac
tattaccgttttgaccaggttggccagcggctgatcggcgagtccggcggccagacttat
cgtctgggcgaccgcgtggaagtccgcgtggaagccgtcaacatggatgagcgtaagatt
gatttcagcctgatttccagcgagcgtgcgccgcgtaatgttggcaaaaccgcccgtgag
aaagcgaaaaagagcacctctggcaaaccgggtggccgtcgccgccaggtgggtaaacag
gtgaacttcgagccggatagcgcgttccgaaaagaaaaagaccaggctaaagcgaagccc
aaaggcgagaagaaagcgaaaaaaccgtcggcgaaaacacagaaaatcgccgccgcgacc
aaagccaagcgcgcggcaaagaagaaaatcgccgagtga
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