Kosakonia radicincitans: A3780_24195
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Entry
A3780_24195 CDS
T04579
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A3780_24195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
krd03400
]
A3780_24195
Enzymes [BR:
krd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A3780_24195
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A3780_24195
DNA repair and recombination proteins [BR:
krd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A3780_24195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-dskA_traR
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
APG20515
LinkDB
All DBs
Position
complement(5215110..5215919)
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPHLVGETILHAVVRNGRLRWPVSDEIHALSDKPVLSVQRRAKYLL
LELPDGWIIIHLGMSGSLRILPHELPAEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKEL
EGHNVLAHLGPEPLSEAFNTDYLQQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRLASSLSRQECEILVRVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRE
GEPCRVCGTPIMAAKHAQRSTFYCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtagaaaccagccgccggggtatcgaaccgcacctggttggc
gaaaccattcttcatgcggtggtacgcaacgggcgattacgctggccggtttccgatgag
atccacgccctgagcgataaaccggtgctgagtgttcagcgccgcgcgaaatatctgctg
ctggagctgccggatggctggatcatcatccatctgggtatgtccggcagcttacgcatc
cttccccatgagcttccggctgaaaagcatgaccatgttgatctggtgatgagcaacggc
aaagtgctgcgctacaccgatcctcgccgctttggcgcatggctgtggaccaaagagctg
gaaggccacaatgtgctggcacaccttggccctgaaccgttaagcgaagcctttaatacc
gattatttgcagcagaagtgcgcgaagaaaaagacggccatcaaaccctggctgatggat
aacaagctggtggtcggcgtaggaaacatctacgccagcgaatcgctgttcgccgccggg
atccatcccgatcgcctggcctcttcgctgtcgcgccaggagtgtgaaatcctggtgagg
gtgatcaaagccgtgctgttgcgatccattgaacagggcggaaccacgctgaaagatttc
ctgcaaagcgacgggaaacccggctattttgcgcaggagttacaggtgtacgggcgggaa
ggggaaccttgtcgcgtctgcggtacgccgattatggccgcgaagcacgcacagcgctca
acgttttactgtcgccgctgccagaaataa
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