Lactobacillus acidophilus FSI4: SD55_0962
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Entry
SD55_0962 CDS
T03681
Symbol
uvrC
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
laf
Lactobacillus acidophilus FSI4
Pathway
laf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SD55_0962 (uvrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laf03400
]
SD55_0962 (uvrC)
DNA repair and recombination proteins [BR:
laf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD55_0962 (uvrC)
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GFIT
Motif
Pfam:
UvrC_RNaseH_dom
UVR
GIY-YIG
HHH_5
HHH_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AJP46355
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Position
920214..922016
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AA seq
600 aa
AA seq
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MATELIENKLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRE
IRDYDIITVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHDPQTRLTSVVH
KDGGYYFGPYPNVYAAQATLKFIRKVYPLRRCHGYQGRPCLYYHMGQCLGACFKKVPQKE
YDEQIKKIKSFLNGDITSVKQDLTTKMEKASENLEFERAAEIRDQLKYIEETVEKQKIIS
NDNTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDAADPEDAFTSFIVQFYGQ
KNRILPKEILIPSGFDDDTLAEVLNVAVRTPQRGQKKSLLDMAKDNAKLKLDDKFRLLEL
GNRKTKGAQKEIFDALGLPYGHVIESFDHSHIQGADPVSALVVFKDGEPDKTSYRKYKLK
GEVEHQNGGDEVRNTREVVRRRYGRLLREHKKMPDLILMDGGQIQVDACEDVLRNELNLN
IPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLDPKSEGFYLMTRIQDEVHRFAITFHRR
RHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEASIEDLRAAGLTLPQAQTVKLML
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagaattaatagaaaataaattgaaacttttgccagaaaaaccaggctgttat
ttgatgaaagatatcaatggtacagttatttatgtgggcaaatctaagaacttaaaaaat
agagtacgttcatattttaaaagtaaacaagtaggtagacgtgctgaattagttcgtgag
attagagattatgatatcatcactgtttctactgataaggaagcatttttacttgaaata
actttaataaaaaaatatcaaccatattataatgttcagttaaaacaaggaactgggtat
ccatatattgaaatcactagagaacatgatccgcaaactcgtcttacaagtgtagtacat
aaagatggggggtattattttggcccgtatcctaatgtttatgctgcacaggcaactttg
aagtttattcgaaaggtttatccattaagacgctgtcatggctatcagggacgtccatgt
ttgtattatcatatgggacaatgtttgggagcatgctttaaaaaggtgcctcaaaaagaa
tatgatgagcaaattaaaaaaattaagagttttttgaatggtgatataacctctgtaaaa
caagatttaactaccaaaatggaaaaagcttctgaaaatcttgaatttgaacgagctgct
gaaattcgtgatcaattgaagtatattgaagaaactgttgaaaaacagaaaattatttct
aatgataatactcaacgtgatatttttaactattacgtagataaatcttggatttccatt
cagattttcttcttaaggcaggcgaaattacttagaagagaaactagaatgtttccttta
actgacgccgctgatccagaagatgcgtttacttcatttattgttcaattttatgggcaa
aaaaatcgaattttacctaaagaaatattgattccttcaggatttgatgatgatactcta
gctgaagttttaaatgtagcagttagaacacctcaaagaggtcaaaaaaaatcattactt
gatatggctaaagataatgccaaactaaaattagatgataagtttagattattagaatta
ggcaatcgaaaaactaagggggcacaaaaagaaatatttgatgccttaggcttgccttat
ggccatgtaattgaaagttttgaccactctcatattcaaggagctgatccagtttctgct
ttagttgtctttaaagatggtgaaccagataaaacctcttatcgtaaatataaactaaaa
ggtgaagtagaacatcaaaatggtggtgatgaagtcagaaatactcgtgaagttgttaga
agaaggtacggccgtcttcttcgcgaacataaaaagatgcctgatttaattttgatggat
ggggggcaaattcaagttgatgcttgtgaggatgtattacgtaatgagctcaatttaaat
attccggtagccggaatggtaaaagatgataaacaccggactaatcatttactttttggt
gatccaattaatggtattccattaaagttaatcccattagatcctaaatctgaggggttt
tacttaatgacacgtattcaagatgaggtacaccggtttgcaattacttttcatcgtagg
cgtcatgcaaagaatgctttatcaagtagattggattctattaaaggaattggaccaaaa
agtcgtaataaattacttaggaattttggctcattgaagaagattaaagaagcttctatt
gaagatttgcgtgcagcgggattaactttgcctcaagcacaaacagtaaaattaatgttg
taa
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