Amylolactobacillus amylophilus: LA20533_06820
Help
Entry
LA20533_06820 CDS
T05031
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lah
Amylolactobacillus amylophilus
Pathway
lah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA20533_06820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lah03019
]
LA20533_06820
03016 Transfer RNA biogenesis [BR:
lah03016
]
LA20533_06820
Enzymes [BR:
lah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LA20533_06820
Messenger RNA biogenesis [BR:
lah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA20533_06820
Transfer RNA biogenesis [BR:
lah03016
]
Prokaryotic type
tRNA degradation factors
LA20533_06820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
Motif
Other DBs
NCBI-ProteinID:
APT18974
UniProt:
A0A0R1YJD3
LinkDB
All DBs
Position
1303678..1306014
Genome browser
AA seq
778 aa
AA seq
DB search
MTQNEQAIANTLEIFRQSPGKLFKVDEIEKMVNFDHSLDFSEVVKTLTFLENEKKIVSDK
HGQFKLAQEDQLLEGSFRANDKGFGFIHLEEEDEQDIFVAKGNTLFALDGDTVTVKIIKG
ANPWNGRGPEGIVTEVLEHKVTSLVGEFMPYSDVMVKKTGYYGYVKSHNKKLKNYSVFIS
EDGIHPQMGDMVKVDITQYPSAVFPTRMLGVALFTIGNKNDPGVDIMSVVYDHDIKTEFD
PEALEQSEAIPDHVLPEEKAARRDLTEEVTVTIDGDDSKDFDDAVTLWKLPNGNYHLGVH
IADVSHYVTEGSPLDQEAFERSNSTYLVDRVIPMLPFRLSNGICSLNPDVERLTLSCDME
ITPSGERVSYDIFQSVIKSHARLTYNSVNKVLDPENTEVLEPKYEELRPMLEEMGKLHEA
LYQKRHARGAIDFEENEAKIIVDENGHPTDIELRQRGIAERMIESFMLMANETVAEHYRK
EHVPFLYRVHETPDEERIKNFFDFIGAFGLNIKADPADVKPLDLQRVVTAVEGTPEEAVV
STVLLRSLKQAKYAPDALGHFGLAAVDYTHFTSPIRRYADLTVHRMIHDYSEKGETEEIK
QHFNVRLEDIADQVSKQERRSIDTEREVDVLKKTEFMMDKVGQHFNATVSSVTSFGMFIA
LPNTVEGLIHISNLTDDYYQFDEKQMTMTGKNTHKVFKIGMPIKVTLINADLNQKQIDFE
LYDPNAPAKPKPTGFSRPRGGAQVNNNRANGKDGNGPRRQNRGQNRSNRRHESNNGHK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaaacgaacaagctatagctaatacccttgaaatatttcgccagagtcctggc
aaacttttcaaggtagatgaaattgaaaaaatggtcaacttcgaccattcgctcgacttc
agtgaggtcgtgaagaccctgacattcctcgaaaatgagaagaaaatcgtgtcggataaa
cacggtcaatttaagttggcgcaagaagaccaacttctagagggctcattcagagcaaat
gacaagggcttcggcttcatccatcttgaagaagaggacgagcaggatatctttgttgcg
aaaggtaatacacttttcgcattggatggcgacactgtgacagtcaaaataatcaagggt
gcgaatccttggaacggccgcggacctgagggtatcgtgaccgaggtgctcgagcacaag
gtgacaagtctagtgggcgagtttatgccttacagtgacgtgatggtcaaaaaaactggc
tattacggctatgtgaagagccacaacaagaagttgaagaactattcagtcttcatctca
gaagacggtattcacccccaaatgggcgatatggtaaaggttgatatcactcaatatcct
tctgcggttttcccaaccagaatgctcggtgtcgcactattcacaattggtaacaagaat
gatccaggtgtcgatatcatgtcagtcgtttacgaccacgatatcaaaacagaatttgat
cctgaggcattggaacagagtgaagccattcctgaccacgttttgcctgaagaaaaagct
gcaagacgcgacctgactgaggaagttacggtcacaatcgatggcgacgactcgaaagac
tttgatgatgcagttactctgtggaaattgccaaatggtaactaccatttaggtgtacat
attgccgatgttagtcattacgtgactgaaggctcacctcttgatcaagaggcttttgaa
cgcagtaactcaacctacttggtagaccgagttattccaatgttgccatttagactatca
aacggcatctgttcgttgaatcctgatgtcgaacgtctcacactcagctgtgacatggaa
atcacgccaagtggtgaacgtgttagttacgacattttccagagtgtgatcaagtcacat
gctcgcttgacttataacagtgtaaacaaggtcttggaccctgaaaacacagaggtgttg
gaacctaagtacgaagaattacgcccaatgcttgaagaaatgggtaagctgcacgaagcg
ctctaccaaaagcgccatgctcgcggagccattgattttgaagaaaatgaagctaaaatc
atcgtggatgagaatggtcacccaactgatattgaactcagacaacgtggcattgctgaa
agaatgattgaatcattcatgttgatggccaacgaaacagttgctgagcactacagaaag
gaacacgttccattcctctatcgggtgcatgaaacacctgacgaagagagaatcaagaac
ttcttcgacttcatcggtgcttttggtttgaacatcaaggctgatccagcagatgttaag
ccgctcgatcttcaaagagttgtgactgcggttgaaggcacaccagaagaggctgttgtc
tcgactgtactcttgcggagtttgaagcaggcaaaatacgctccagatgcactgggacac
tttggcctagctgctgttgattacacgcactttacctcaccaattcggcgttatgctgat
ttgactgtgcatcgcatgattcatgattacagtgagaagggtgaaactgaggaaattaag
cagcatttcaatgtccgtcttgaagacattgccgaccaagtttctaagcaggaacgtcgt
tcaatcgataccgaacgtgaagttgatgtcttgaagaagaccgaattcatgatggataag
gttggccaacactttaacgcaactgtgagttccgtaactagcttcggtatgttcatcgca
ctgccaaatactgttgagggtctcatccatatctcgaatttgactgatgattactaccaa
tttgacgagaagcagatgacgatgaccggtaaaaatacgcacaaggtattcaaaattggg
atgccaatcaaggtgacgctgattaacgcagatttgaaccagaagcagattgacttcgag
ttatatgacccaaatgcgccagcaaagccaaagccaaccggttttagccgaccaagaggt
ggtgcgcaggtgaataataatcgtgcaaatggtaaggacggcaatggccctcgcagacaa
aatcggggacaaaaccgctctaacagaagacacgaaagtaataacggtcacaaataa
DBGET
integrated database retrieval system
