Lactobacillus amylovorus 30SC: LAC30SC_05830
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Entry
LAC30SC_05830 CDS
T01436
Name
(GenBank) excinuclease ATPase subunit
KO
K03701
excinuclease ABC subunit A
Organism
lai
Lactobacillus amylovorus 30SC
Pathway
lai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAC30SC_05830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lai03400
]
LAC30SC_05830
DNA repair and recombination proteins [BR:
lai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAC30SC_05830
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAC30SC_05830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
DnaJ_CXXCXGXG
AAA_15
nSTAND1
AAA_21
AAA_29
RsgA_GTPase
ATPase
DUF463
cobW
nSTAND3
DUF2321
DUF4350
Motif
Other DBs
NCBI-ProteinID:
ADZ07306
UniProt:
F0TF12
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All DBs
Position
1152540..1155044
Genome browser
AA seq
834 aa
AA seq
DB search
MALPTKIEVRGAKVHNLKNIDVDIPLHKFVAISGLSGSGKSSLAMGILYEEGSRRYLDAL
STYMRRRIKQGTQADVTSVKHIPSALALRQRPSVPNERATVGTTTETFNVLRLIFSRLGS
PVCPNGHRVTSSLEIAEAAAKFGAEMGMITCPTCGVKFRMFSAEDFAFNSDGACKNCGGT
GKVRQLDENKLIADENLSIEDGAVASWNLPGRNFMPNVAQHAGVRIDIPFKDLTDKEKDF
VLNGPEKKYKMDLISSNGRVFHNFNVLYENATQAVLRSAKSSKSERAQKRIAEFFTYSTC
PVCHGTRLRPELLKQLVNGKNIYQVEQMQLGDLPKWSKEVLAQLPDDMQKMASSLINEFT
NNLQPLLDLGLDYLTMARAGNTLSTGELQRIQLARTLRTETTGVLYVLDEPSIGLHPANV
DGLIKVLRKLVDQGNSLVVVDHNVDIISAADEIIEIGPGSGEQGGEIWDQGSPVEIKNDP
QSLIAPYLNGKAKLMARKTSEKVNTEKITFEVNHYFNLHDIKAGIPLNQITAVTGFSGAG
KTSLILDSLVPAIQNQSKDEKLPKQIKKFNSPVHNVVSVDASPIGKSTRSTVATYISIMD
NLRKLFARQPMAKEKHYTPSYFSYNNKEGACPTCGGTGIVTLDIQFLPDMQQTCPTCHGE
RYNSKIQQVKWHNLSIVDVLNLDINEALPVFKRVPKIERELELLKEVGLDYLHLGESTPT
LSGGEAQRLKLVTHLSHKQDDTLFVFDEPTIGLHPLDVKVLVQVMQKLLDQGATIITITH
DLNLIVNADYMLDLGPRGGENGGRVVAEGKPADLIKKPESLTVKYLADYWKQFK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaccaacaaaaattgaagtacgtggtgcaaaagtccacaacttaaagaatata
gatgtcgatattcctttgcacaaattcgtcgctatttcaggtttatccggttcaggtaaa
tctagcttagcaatgggtattctttatgaagagggttcccgtcgctacctcgatgcttta
tctacttatatgcgtcgtcgaattaaacagggcacacaagcagacgtaacaagtgtaaaa
catattccatcagctttagccctgcgtcaacgtccaagtgttccaaatgaacgagccact
gtcggaactacaactgaaactttcaatgttcttcgtttaattttttcaagattaggttca
ccagtttgtcctaatggccacagggttacttcaagtttagaaatcgcagaagcagcagcg
aaatttggtgccgaaatgggtatgattacttgtccaacctgtggtgttaagtttcgcatg
ttcagtgccgaggattttgcctttaattcagatggtgcctgcaaaaactgcggtggtact
ggtaaagttcgccaacttgatgaaaataaattaatcgccgatgagaatctttctattgag
gacggagcagtagcttcatggaatctgccaggtagaaacttcatgccaaatgtggcacaa
cacgctggcgtcagaattgatattccctttaaagatctaaccgataaggaaaaagatttc
gtcttaaatggtccagagaagaaatacaagatggacttaatatccagtaatggtcgtgtt
ttccataattttaatgtcctttatgaaaatgctactcaagcagttttacgatctgctaaa
agtagtaagagcgaacgtgcacagaaacggatcgctgaattctttacttattcaacttgt
ccagtttgtcatggtacacgccttcgtcctgagcttttaaaacaactggttaatggcaaa
aacatttatcaagtagagcaaatgcagctaggtgatttacctaaatggagtaaagaagta
ttagctcaattgccagacgatatgcagaagatggccagttctttgatcaatgaatttaca
aataatttgcaaccattgctagatctaggtcttgattatttgactatggccagagcaggt
aatactttgtcaacgggtgaattgcaaagaattcaattagctagaactctcagaactgaa
actactggtgtactttatgttttagatgagccatcaattggtttacacccagccaacgtt
gatggtttgattaaagttttgcgtaaattagtcgatcaaggaaactcattagtcgtagtg
gaccacaatgtcgacattattagtgctgctgatgaaattatcgaaattggtccaggatct
ggtgagcaaggtggggaaatttgggatcaaggcagtcctgtcgagattaaaaatgatccg
caatcattaattgcaccatatttgaatggtaaagctaaattaatggctagaaaaacaagc
gagaaagttaatactgaaaaaattacttttgaagtaaatcactactttaacttgcatgac
attaaagctggcatccctcttaatcaaatcactgcagtcaccggtttttctggtgccggt
aaaactagtctaatcctcgattcacttgttccagcaattcaaaaccaaagtaaagacgaa
aaattacccaagcagattaaaaaatttaattcaccagtccataacgtggtcagcgttgat
gcgtcgccaatcggaaaaagtacgcgttcaaccgtcgctacttatatatcgatcatggac
aatttgcgtaaactctttgcccgtcaaccaatggcaaaagaaaagcattacacgcctagt
tacttctcttacaacaataaagaaggagcttgcccaacttgtggcggtactggaattgtt
accctagacattcaatttttgcctgacatgcaacagacttgtccaacctgtcatggtgaa
cggtacaattctaagattcaacaagttaaatggcataatctgtcaatcgtcgatgtttta
aacttagacattaatgaggccttacctgtctttaaacgcgtgccaaagatcgaacgtgaa
ttggaattgcttaaagaagttggccttgactacttacacttaggtgaaagtacgccaact
ttatccggtggagaagctcagagattaaagcttgtaactcacttaagtcataagcaagac
gacactttatttgtttttgatgaaccaactattgggcttcacccactggatgtaaaagtt
ttagttcaagtaatgcaaaagttgctcgatcaaggtgcgacgattattacgattactcac
gatttgaatctaattgttaatgcagattacatgttagatcttggcccacgtggtggtgaa
aatggtggtcgggtagtcgccgaaggtaagccagctgatttaattaagaagccagaaagc
ttaacagttaagtatttagcagactattggaaacaatttaaataa
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