Lactobacillus amylovorus 30SC: LAC30SC_06970
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Entry
LAC30SC_06970 CDS
T01436
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lai
Lactobacillus amylovorus 30SC
Pathway
lai03410
Base excision repair
lai03430
Mismatch repair
lai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LAC30SC_06970
03430 Mismatch repair
LAC30SC_06970
03440 Homologous recombination
LAC30SC_06970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lai03400
]
LAC30SC_06970
DNA repair and recombination proteins [BR:
lai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LAC30SC_06970
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LAC30SC_06970
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAC30SC_06970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ADZ07508
UniProt:
F0TFL4
LinkDB
All DBs
Position
complement(1342715..1344988)
Genome browser
AA seq
757 aa
AA seq
DB search
MKWQQRTAEELDPSLIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMHDM
DKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVYYFIPDRFKDGYGPN
IDRYHDIVADGTKLIITVDNGVTGIDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVHCN
YPGQKYPFDDYCGAGVAYTICRGLMQDTMPELLDLAMIGTIGDMVKVTGEGHVIVKRGLE
VLNQTERPGLRALIKNAGLTLGSINETDIGFNIAPRLNAVGRLANANLAVELLLSDDDVE
AQKIADQIEELNNQRKELTTEVYDKCMALIRENSWQKQNTLVLYDPDFHEGVLGLVANKI
VEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEELFTKFGGHDFACGLSMTED
KIGALREKLEKGFHVEGGLEIKEYDMELPLQGLSPQILAQINQVGPFGTGDAQPIFSISN
PTITQFFKIGKEKNHVKFNVAKKGGSLAVIGFNKDFLNNNLLPFIARVFVQLSLNTYRNK
ISLQGIIEGIEFASPKLAVPTPVIDLRQEKLVMGFADRYLLFDKKNIPIVRNRLQVSDDK
ISLVKDYDKSGETVALLDVPRNQIELNSALEKNYQQIYLRFLLDQLPVEHIPAKSYFGKV
LKYIYAHPTLSPDDYRTVAPYLGLDYDSVLFILRVFFELGFVKLDDGKLVGEQHPQKQPL
TASKYLRATQSQIKFVDQLRTMPTQQIITYVNNFLNN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcaacaaagaactgctgaagagctagatccaagtttgatagaaaagtatcag
ctaagtccaattgcggcaaagctttttgccttacgtggcattgacagcgatgaaaaacta
gatttctggtttaatgcgaccgaagagaatttagcggatccttcgcttatgcatgatatg
gataaggccattgatcgaatcaatcaagcaattgataatggtgaaaagattacgatttat
ggcgactatgatgctgacgggatcactgcgacaacgattatgacagagactctaagtatt
ttaggtgctgatgtgtattactttattccagatcgctttaaagacggctatggccctaat
attgatcgctatcatgatattgttgcagacggtaccaaattaattattactgtagataat
ggtgtgactggtattgacgaagttaaatatgctaaagaacatggtgtagatacaatcgta
accgaccaccacacttttcaagaacaaaagccagatgcctatgccatcgtacactgtaat
tatcctggccaaaaatatccttttgatgattattgtggtgcaggtgttgcctacacaatc
tgccgcggcttaatgcaggatacgatgccagaactacttgatttagccatgataggtacg
attggcgatatggttaaagtaaccggagaaggtcacgtaattgttaaacgagggctggaa
gtacttaaccaaactgagcgaccaggtttgcgtgccctgataaagaatgctggcttaact
ttaggctcgattaacgaaacagatatcggctttaatattgctcctcgtttgaatgcggta
ggtcgattggccaatgctaaccttgcagttgagttattattaagcgacgacgatgttgaa
gcacaaaagattgcggatcaaattgaagagctgaataatcagcgtaaggaattgacgact
gaagtctatgataaatgtatggcgttaatccgtgagaatagctggcaaaaacaaaatacg
cttgttttatatgatccagattttcatgaaggtgtgttgggcctggtagccaataagatc
gttgagaagacgcataagccaacgatcgttttaactaagaatcaggctggagaaatcaaa
ggttcaggtagatcaattactggctttaatttgtttgatgcccttaatcctttaaaagaa
gagctttttaccaaatttggtggtcatgattttgcctgcggtttatcaatgactgaagat
aaaattggtgctttaagagaaaagcttgagaaaggttttcacgttgaaggtggacttgaa
attaaggaatatgatatggaactgcctttgcagggattgtcaccacagatcttagcgcag
attaatcaagtgggaccgtttggaacgggggatgcacagccaattttcagtatctccaac
ccaacgattacccaattttttaagattggtaaagagaagaatcacgtcaagtttaatgtc
gctaaaaagggtggcagcctggctgtaattggttttaataaagactttttaaacaataat
ttgttgccatttattgccagggtctttgttcaattgtcgcttaatacttatcgcaataag
atatcgttgcaaggtatcatcgaaggaattgaatttgcttcacctaaattagctgttcct
acgccagttattgatttgcgtcaagaaaagctagtcatgggttttgcagatcgttatttg
ttatttgacaaaaagaatattccaattgttaggaatagactgcaagtaagtgacgataag
attagtttggttaaagattacgacaaatctggtgaaacagttgctttgcttgatgtacca
cgcaatcaaatcgaattaaattcggcactagaaaagaattaccaacaaatttacttacgt
ttcttgcttgatcaattgccagtagagcatattccagcaaaaagctattttggcaaagtg
ttgaaatatatttatgctcacccaacgttgagtccagatgattatcgcaccgtagcgcca
tatcttggcttagattatgacagtgtattgttcattttacgtgtcttctttgaattaggc
tttgttaaattggacgatggcaagctagtaggcgagcagcatcctcaaaagcagccttta
acagcatctaagtatttgagagcaacgcagtcacaaattaagtttgtcgatcaattgaga
acaatgccaactcagcaaattatcacatatgttaataattttttgaataattag
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