Lingula anatina: 106159894
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Entry
106159894 CDS
T04921
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lak
Lingula anatina
Pathway
lak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106159894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lak03041
]
106159894
Enzymes [BR:
lak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106159894
Spliceosome [BR:
lak03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106159894
Complex B
106159894
Complex C
U2 SnRNP specific factors
106159894
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
106159894
NCBI-ProteinID:
XP_013391793
UniProt:
A0A1S3I0K7
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
MSFNRGNDGKPRGFGFSGFSVGNKKALENPGFSLNFGGAASRAFGHGTKIGRRRIKSEED
YFDDDDEAVNEADLEYQPAPGSPGHDGKGDSKEGGYGSDESDDPLDAFMANLEQEELGVK
PSAEAEVKKGSDSAKKEKEKKGVRDDIEEEDVQEAYFRYMEENPNAGLNPEDDIDIEYDQ
DGNAIITEKHKIIDPLPPIDHSDIDYDPFVKNFYTEHEEIARLTYPEVLELRKKLNTRVS
GLDPPKPVSSFAHMGFDEALMQGIRKMGYTQPTPIQAQGVPIALSGRDIIGIAKTGSGKT
AAFLWPLLVHIMDQKELKPGDGPIGLICAPTRELSQQIYHEAKRFGKVYNIHVVCAYGGG
SMWEQTKACQEGAEIIVCTPGRLIDLVKKKATNLTRVTYLVFDEADRMFDMGFEPQVRSI
ANHVRPDRQTLLFSATFRKRIERLARDILTDPVRVVQGDLGEANEDITQVVEVLPPGGAK
WVWLTSRLVEFMSVGSVLIFVTKKANSEELATNLKARDFKVGLLHGDMSQQERNEVINQF
KKKEIPTLVATDVAARGLDIPSIKTVVNFDVARDIDTHTHRIGRTGRAGEKGMAYTLVTE
KDKEFAGHLVRNLEGASQEVPKKLMDLAMQANWFRKSRVRQGKGKKLNVGGQGLGFRERP
GLGSGGTQVTDTSTPGGSIGTSTKAPTSFSAYEPSRSAGPQSDRVAAMRAAFSAQFKSNF
VSASDKDSAWIGNPEHVNSGTYQDINQEGRPEKKKRKTRWE
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgagctttaaccgaggcaatgatgggaagccaaggggttttggattcagtggattctct
gtggggaataagaaagcactggaaaatccagggttttctctcaactttggtggagcagca
tccagagcattcggccatggaacaaaaatagggagaaggagaataaaaagcgaggaggat
tactttgatgatgatgatgaggcagttaatgaggcggacttggagtaccagccagcgcca
ggaagtcctgggcatgatgggaagggggacagtaaagagggcggatatggtagcgatgaa
agcgatgatcctctggatgccttcatggcaaatctggagcaagaagagctgggagtaaaa
cccagtgcagaagctgaagtgaagaaaggttcagatagtgctaagaaagaaaaagagaaa
aaaggagtgcgtgatgatattgaggaggaggatgttcaggaagcatattttcgctacatg
gaagaaaaccccaatgcagggcttaatccagaagatgacattgacatagagtatgaccaa
gatggcaatgccattataacagaaaagcacaagatcatagaccctctccctcccattgac
cactcagacattgactacgatcccttcgtaaaaaatttctacacagaacacgaggagatt
gctcggttgacctaccctgaggtgctagagctgaggaaaaaacttaatacaagggtcagt
gggcttgaccccccaaaacctgtgtccagttttgctcacatgggctttgacgaggcactg
atgcaggggatacggaagatgggttacacccagccgacgcccatccaggcccagggagtc
cccatagccctcagtgggcgagatatcatagggattgccaagactggcagtggcaaaaca
gcagcattcttgtggccactgcttgtacatattatggaccagaaagagttaaagccaggg
gatggccccataggacttatatgtgcccccaccagggagctgtcacaacagatctaccat
gaagccaagaggtttggtaaggtgtataacatccatgtggtctgtgcctatggtggcggg
agtatgtgggaacagaccaaagcttgccaggagggggcggagatcatcgtctgcacaccg
ggtcgtcttatagatcttgtgaagaagaaggccacaaacctcacacgagtgacgtacttg
gtatttgacgaggcggacaggatgtttgatatgggatttgagcctcaagtaagatcaata
gccaatcacgtgagaccagacagacagactctgttgttcagtgcgacatttcgtaagagg
attgagcggttggcgcgggatatcctgacagaccctgtacgagtggtacaaggagatttg
ggagaggccaatgaggacatcacacaggtagtggaggtgctgccccctggcggtgcgaag
tgggtgtggttgacatcacgactcgtggagttcatgtcagttggaagtgtcctaatattt
gtaacaaagaaagccaatagtgaggagctggcaacaaatctcaaagcaagagattttaaa
gtgggtttactgcatggagatatgagccagcaagaaagaaatgaggtcatcaatcagttt
aagaagaaagaaatccctactttagtggcaaccgatgtggcagctcgaggtcttgacatc
ccttccattaaaacagtagtgaattttgacgtagccagggatattgacactcacactcat
aggattggaagaacaggaagagcaggtgagaagggcatggcctacacactggtcactgag
aaggacaaagaatttgcgggtcatctggtgcggaacctggaaggtgccagccaagaagtc
cccaagaaactcatggatctcgctatgcaggcaaactggttccgtaaatcacgtgtacgc
cagggtaaaggaaagaagttaaatgtcgggggtcaaggtcttggattccgggagcgaccg
ggactgggatcaggaggaacacaggtgacggatacttccacaccagggggaagcattggt
accagtaccaaagcaccaaccagtttcagtgcgtatgagccgtcacggtcagcagggccg
cagagtgacagagtagccgccatgagggcagccttttctgctcagtttaaatcaaacttt
gtcagcgccagtgacaaagactcagcctggataggaaatcctgaacatgtaaactcgggc
acttatcaggacattaaccaagagggcagacctgagaaaaagaaacggaaaacaagatgg
gagtga
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