KEGG   Lingula anatina: 106176065
Entry
106176065         CDS       T04921                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
lak  Lingula anatina
Pathway
lak03013  Nucleocytoplasmic transport
lak03015  mRNA surveillance pathway
lak03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106176065
  09122 Translation
   03013 Nucleocytoplasmic transport
    106176065
   03015 mRNA surveillance pathway
    106176065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lak03019]
    106176065
   03041 Spliceosome [BR:lak03041]
    106176065
Enzymes [BR:lak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     106176065
Messenger RNA biogenesis [BR:lak03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     106176065
Spliceosome [BR:lak03041]
 Complex C
  Other components
   EJC/TREX
    106176065
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106176065
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 106176065
NCBI-ProteinID: XP_013413735
UniProt: A0A1S3JTN9
LinkDB
Position
Unknown
AA seq 425 aa
MAEEAENELLDYEEEEADATTEAAGDAPVKKDVKGTYVSIHSSGFRDFLLKPELLRAIVD
CGFEHPSAVQHECIPQAILSMDILCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVGCHT
RELAFQISKEYERFSKYMSNIRVAVFFGGMPIKKDEEVLKKNCPHIVVGTPGRILALIRS
KALNLKHIKHFILDECDKMLEQLDMRRDVQDIFRNTPHEKQVMMFSATLSKEVRPICKKF
MQDPMEVYVDDDSKLTLHGLQQHYVKLKESEKNRKLFELLDLLEFNQVIIFVKSVQRCMA
LAALLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQDRFEVNITELPDEIDLSS
YIEGR
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcagaagaggcggaaaatgaattgttggactacgaagaagaggaggccgacgccacc
acggaggcagccggtgatgcccctgtgaagaaagacgtgaagggcacctacgtgtccatc
cacagctctgggttcagagatttcttactgaaaccagaactgttgagagctattgtagac
tgtggttttgaacatccttctgcagtccagcacgagtgcattcctcaagctatcttgtct
atggacatcctgtgccaggccaagtctggtatgggaaagacagccgtgtttgtgctggct
acacttcagcagctggaaccagtggacggacaggtctcagtacttgtaggctgtcatacg
agggagctggccttccagattagcaaggagtatgagagattcagcaagtacatgagcaac
atccgggtcgctgtgttctttggtggcatgcccatcaagaaggacgaagaggttctgaaa
aagaactgcccccacatcgtggttggaaccccaggacgtattttggccctgattcgcagc
aaggcactgaacctgaagcacatcaagcattttattctggatgagtgtgataagatgttg
gagcagcttgacatgcgccgtgatgtgcaagatatcttcagaaacacaccacatgagaag
caagtgatgatgttcagtgccacccttagcaaggaagtccgtcccatctgcaagaagttt
atgcaagatcctatggaagtgtatgttgatgacgactccaaactgacattgcacggactg
cagcaacactatgtcaagctgaaggaaagtgagaagaacaggaaactctttgaactcttg
gatctgttggagttcaaccaggtgatcatatttgtgaagtctgtccagaggtgcatggcc
ctggcagctctcctagtggagcagaacttcccagctattgctatccacagggctatgaca
caggaagagagactgtctcggtaccaacagttcaaagattttcagaagagaatcctggtg
gccaccaacctgtttggcagagggatggacattgagagagtcaatattgtgttcaactat
gacatgcctgaagactctgatacctaccttcacagggtggccagagctggtcgttttggt
accaaaggtttggccatcacacttgtctcagatgaaagtgatgccaagattctaaatgat
gtccaagacagatttgaggtcaacattacagaacttcctgatgaaattgacctttcctca
tacatcgaaggacgttaa

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