Lingula anatina: 106176065
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Entry
106176065 CDS
T04921
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lak
Lingula anatina
Pathway
lak03013
Nucleocytoplasmic transport
lak03015
mRNA surveillance pathway
lak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106176065
09122 Translation
03013 Nucleocytoplasmic transport
106176065
03015 mRNA surveillance pathway
106176065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lak03019
]
106176065
03041 Spliceosome [BR:
lak03041
]
106176065
Enzymes [BR:
lak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106176065
Messenger RNA biogenesis [BR:
lak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106176065
Spliceosome [BR:
lak03041
]
Complex C
Other components
EJC/TREX
106176065
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106176065
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
106176065
NCBI-ProteinID:
XP_013413735
UniProt:
A0A1S3JTN9
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MAEEAENELLDYEEEEADATTEAAGDAPVKKDVKGTYVSIHSSGFRDFLLKPELLRAIVD
CGFEHPSAVQHECIPQAILSMDILCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVGCHT
RELAFQISKEYERFSKYMSNIRVAVFFGGMPIKKDEEVLKKNCPHIVVGTPGRILALIRS
KALNLKHIKHFILDECDKMLEQLDMRRDVQDIFRNTPHEKQVMMFSATLSKEVRPICKKF
MQDPMEVYVDDDSKLTLHGLQQHYVKLKESEKNRKLFELLDLLEFNQVIIFVKSVQRCMA
LAALLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQDRFEVNITELPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaggcggaaaatgaattgttggactacgaagaagaggaggccgacgccacc
acggaggcagccggtgatgcccctgtgaagaaagacgtgaagggcacctacgtgtccatc
cacagctctgggttcagagatttcttactgaaaccagaactgttgagagctattgtagac
tgtggttttgaacatccttctgcagtccagcacgagtgcattcctcaagctatcttgtct
atggacatcctgtgccaggccaagtctggtatgggaaagacagccgtgtttgtgctggct
acacttcagcagctggaaccagtggacggacaggtctcagtacttgtaggctgtcatacg
agggagctggccttccagattagcaaggagtatgagagattcagcaagtacatgagcaac
atccgggtcgctgtgttctttggtggcatgcccatcaagaaggacgaagaggttctgaaa
aagaactgcccccacatcgtggttggaaccccaggacgtattttggccctgattcgcagc
aaggcactgaacctgaagcacatcaagcattttattctggatgagtgtgataagatgttg
gagcagcttgacatgcgccgtgatgtgcaagatatcttcagaaacacaccacatgagaag
caagtgatgatgttcagtgccacccttagcaaggaagtccgtcccatctgcaagaagttt
atgcaagatcctatggaagtgtatgttgatgacgactccaaactgacattgcacggactg
cagcaacactatgtcaagctgaaggaaagtgagaagaacaggaaactctttgaactcttg
gatctgttggagttcaaccaggtgatcatatttgtgaagtctgtccagaggtgcatggcc
ctggcagctctcctagtggagcagaacttcccagctattgctatccacagggctatgaca
caggaagagagactgtctcggtaccaacagttcaaagattttcagaagagaatcctggtg
gccaccaacctgtttggcagagggatggacattgagagagtcaatattgtgttcaactat
gacatgcctgaagactctgatacctaccttcacagggtggccagagctggtcgttttggt
accaaaggtttggccatcacacttgtctcagatgaaagtgatgccaagattctaaatgat
gtccaagacagatttgaggtcaacattacagaacttcctgatgaaattgacctttcctca
tacatcgaaggacgttaa
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