Companilactobacillus allii: BTM29_01010
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Entry
BTM29_01010 CDS
T05413
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lalw
Companilactobacillus allii
Pathway
lalw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTM29_01010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalw03019
]
BTM29_01010
03009 Ribosome biogenesis [BR:
lalw03009
]
BTM29_01010
Enzymes [BR:
lalw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BTM29_01010
Messenger RNA biogenesis [BR:
lalw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTM29_01010
Ribosome biogenesis [BR:
lalw03009
]
Prokaryotic type
rRNA helicases
BTM29_01010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NitrOD5
CMS1
Helicase_RecD
CobA_CobO_BtuR
Arginosuc_synth
YnfE
Motif
Other DBs
NCBI-ProteinID:
APX71215
UniProt:
A0A1P8Q043
LinkDB
All DBs
Position
complement(185927..187480)
Genome browser
AA seq
517 aa
AA seq
DB search
MKFSELDLDSRLLKAVDDAGFEETTPIQAETIPLVLAGDDVIGQAQTGTGKTAAFGLPIL
DAIDMTSNDIQALIISPTRELAIQTQEELYRLGRDKKVKVQSVYGGSDIRRQIRALKNHP
NIIVGTPGRMLDHINRRTLKLGNVKTVVLDEADEMLDMGFVEDIESILSNVPNQHQTLLF
SATMPKPIMRIADKFMTNPKIVKIKSKELTADKIDQYFVKARDFEKFDLMTRLFDVQGPE
LALIFGRTKRRVDELTRGLQARGYNAEGLHGDLSQDKRTSVLRKFKAGKLEFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGISVTFVTPNEMSYLRTIENLTKK
RMKPLSPPTDTEVLKGQLESVKEEVKNTIATDSNLDRFDDAVKELLGEYSAEDLVKVYLT
TTIKDAESVPVKIAPERPLPSRKVSRNRSGHGRRGNYGHDRNRNGGGNHHSRRHDDHRGG
SGSSNNHGGKSGEKRHESKNNSKAKPSKKNFKIRTNL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttagcgaattagatttagattcaaggttattaaaagctgttgatgatgcaggt
tttgaagaaactacacccatccaagcagaaactattccactggtattagccggtgatgat
gtaattggacaagcccaaactggtacaggtaagacagcagcttttggccttccaattcta
gatgccattgatatgacatcaaatgatattcaagctcttattatctcacctacaagagaa
ttggccatccaaactcaagaagagttatatagattaggccgcgataagaaagttaaagta
caatctgtctatggtggttctgatatcagaagacaaattcgtgctttgaagaaccaccct
aatattattgttggtactccaggccgtatgcttgatcatatcaacagacgtactcttaaa
ttaggtaatgttaaaacagttgtcttagatgaagctgatgaaatgctagacatgggattt
gttgaagacatcgagagcatcctttcaaatgttcctaatcaacaccaaactctattgttc
tcagctactatgccaaaacctatcatgcgtattgctgataagttcatgactaaccctaag
attgttaagatcaagtcaaaggaattaacagctgacaagatcgatcaatactttgttaaa
gctcgtgactttgaaaagtttgatttgatgactagactttttgatgttcaaggaccagaa
ctagcattgattttcggtagaacaaagcgtcgtgttgatgaattgacacgtggtttgcaa
gctcgtggttacaacgctgaaggacttcatggtgacttgtcacaagataagcgtactagt
gttcttcgtaaatttaaggctggtaagttagagttccttgttgcaactgatgttgcagct
cgtggattggatatttctggtgtatcacatgtttataactatgatattcctcaagatcca
gacagctatgttcaccgtattggacgtacaggacgtgcaggacattcaggtatttctgta
acttttgttacacctaatgaaatgagttacttacgtacaattgaaaacctaactaaaaaa
cgtatgaagccactttcacctccaactgatacagaagttcttaaaggacaacttgaatca
gttaaggaagaagttaagaatacaatcgctactgattctaacttggatcgtttcgacgat
gcagttaaagaattacttggtgaatattcagctgaagacttggttaaagtttacttaaca
acaactatcaaggatgctgaaagtgttcctgttaagattgcacctgagagaccacttcct
tcacgtaaggtaagtcgtaatcgttcaggtcatggtagacgtggtaattatggtcatgat
cgcaatcgtaacggtggtggaaaccatcattcaagaagacatgatgatcatcgtggtggc
agtggtagtagcaataaccatggtggtaagtcaggcgaaaagcgtcatgaaagtaaaaac
aattccaaagcaaaaccatcaaagaagaattttaagatcagaacaaatctataa
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