Lacinutrix sp. 5H-3-7-4: Lacal_0446
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Entry
Lacal_0446 CDS
T01533
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
lan
Lacinutrix sp. 5H-3-7-4
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lan03021
]
Lacal_0446
Transcription machinery [BR:
lan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Lacal_0446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
Terminase_5
HrcA_DNA-bdg
HTH_28
DUF6792
Motif
Other DBs
NCBI-ProteinID:
AEH00298
UniProt:
F6GC43
LinkDB
All DBs
Position
complement(484744..485307)
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AA seq
187 aa
AA seq
DB search
MKVIQLYKNEAKLIKKAIDNNREAQRVLYELHAPKMLSVCRYYIKDMQHAEEAMLNGFLK
VFSNLKSFKSQGSFEGWIRRIMVRESISFLRKKKQIEFSSDTIESHNTTYDSSQTDLDVE
HIQKLIDALPEGYKIVFVMYAIEGYKHKEIANMLGINEGTSKSQLFKARQLLQEQIKTIN
TSSYGTN
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagtcattcaactctacaaaaacgaagcaaagcttataaaaaaggcaatcgataat
aatcgtgaagcacaacgtgtgttgtatgagttgcatgcgccaaaaatgctaagtgtatgt
cgttattatataaaagatatgcaacatgctgaagaagcaatgttaaatggttttttgaaa
gtattttctaatttaaaaagctttaaatctcaaggtagttttgaaggttggattaggcgt
attatggtaagagaatctatttcttttttaaggaaaaaaaagcaaattgaatttagttca
gatactatagaatctcataatacaacttacgattccagtcaaacagatttagatgtagag
cacattcaaaaacttatagatgcattgccagaaggttataaaatagtatttgtaatgtat
gcaatagaaggatacaagcacaaagaaattgcaaatatgttaggcataaacgaaggcaca
tcaaaatcgcaattatttaaagcgagacaattattacaagagcaaataaaaaccattaat
acatcgagttatggcaccaattaa
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