Luteibacter anthropi: KR767_18990
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Entry
KR767_18990 CDS
T08319
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lanh
Luteibacter anthropi
Pathway
lanh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lanh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KR767_18990 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lanh03400
]
KR767_18990 (ligD)
Enzymes [BR:
lanh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KR767_18990 (ligD)
DNA repair and recombination proteins [BR:
lanh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KR767_18990 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF4265
Motif
Other DBs
NCBI-ProteinID:
URX62106
LinkDB
All DBs
Position
complement(4502831..4505311)
Genome browser
AA seq
826 aa
AA seq
DB search
MSLHEYRRKRDFDRTNEPGPDRAGGRGHRAIFVVQLHHASTRHFDFRLQLGDALKSWAVP
KGPSFDPAVKRLAVEVEDHPVPYADFEGDIDEGYGKGHVDIFDKGVWTSPGDVEAQLAKG
HLTFELFGERLKGGWHLVRSSKRERQPAWFLIKADDAFASDLEADDLLDGRMRASTKRAG
KGREAVRRSTKTSRLPRKQGSWNALARELDVLDGARDAAPSARFLAPQLTRLRDAPPQGD
GWIHEVKWDGYRLTATVVDGRVAVWSRNGLFWNERVPEIVQAIEALGLSSARFDGELVAF
DAKGRSDFNALQKTLAGEGQAPLAYVMFDMPYLLGKDLAYVPLIQRKALLERVLEHAPAQ
LRYSSHHAGDGPAVFDQAIAHQLEGIISKRAEGIYDPGGRDDWLKIKRLESDEFAVVGFT
RAKGSRLALGSLLLAKPGEGKRWNYVGRVGTGFSDDLLRELGRDFARKGHETPPVPLDGV
DPLLQGEQWVKPAVVAEVFFRGYSGGGLLRQASLKALRFDKSPDDLQTTDAAEDTPMIAI
THPGRLVYPDDGITKQQVVDYYRAVMDWILPPIVDRPLSVVRCPDGIDGATFFQKHALSG
LKRAGLTRIAEKKGGHAEYLYPQDAEGLIELVQFGAVEFHPWGAHIADPDRADRIVFDLD
PGDGVAWGRVVEAARTVRSLLDALGLVSFVRTSGGKGLHVVVPLKPASDWDTVKLFARGF
AEAMAGTQPTEFVATATKSLRKGKIYIDYLRNGRGATAIASYSLRARAGAPVATPLRWDE
LGKLRSGSDFDIHSMPKRLARLKSDPWSAIDEVRQSLDDVGRRFHR
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacgaataccgtcgcaagcgtgacttcgaccgcacgaatgaacctgggcca
gaccgtgctggtggtcgcggtcacagggcgatcttcgtcgtccagctgcatcatgcatcg
acgcgtcatttcgattttcgcttgcagttgggcgacgcgcttaaaagctgggcggtgccc
aaggggccaagcttcgaccctgccgtgaaacgcctggccgtggaagtggaagaccacccg
gtgccctatgccgacttcgaaggcgatatcgatgagggctacggcaaggggcatgtcgat
atcttcgacaaaggcgtctggacttcgcccggcgatgtcgaagcccagctcgcgaagggg
cacctgaccttcgagctgtttggtgagcgactcaaaggcggctggcacctcgtccgcagc
agtaaacgcgaacgccagcccgcctggttcctgatcaaggccgatgatgcttttgccagc
gaccttgaggccgatgacctgctcgatggcaggatgcgggcgagcacgaagcgtgccggg
aagggcagggaggccgttcgcagaagcacaaagacatccaggctgcctcgaaagcagggt
tcatggaatgcgctggccagggaactggacgtgctcgacggcgccagggatgctgcgcca
tcggcccggttcctggcgccgcaactgacccgcctgcgggatgcacctccgcaaggcgat
ggctggattcacgaggtgaagtgggatggatatcgcctgacagccacggtggtcgacggt
cgtgtcgccgtctggtcacgcaacggccttttctggaatgagcgcgtgccggagatcgtc
caggccatcgaggcccttggtttgtccagcgcacggttcgacggtgagctggtggcattc
gacgcgaagggccgaagcgacttcaatgctcttcagaagactctcgccggggaaggccag
gcaccgctagcctatgtgatgttcgatatgccctatctgctggggaaggatctcgcatat
gttcccctgatccagcgcaaggcgctcctggaacgggtgctcgaacatgcgccagcgcag
ctcaggtatagcagccatcatgccggcgatgggcctgcggtcttcgaccaagccatcgct
caccaactggaaggcatcatttccaagcgggctgagggaatctacgatccggggggccgt
gatgactggctcaagatcaagcgactggaaagcgacgaatttgccgtggtcggattcacg
cgtgccaaaggctcccgtctcgcgctgggttcgttgctgctggcaaaaccgggagaagga
aagcgctggaactacgtgggacgcgtaggcaccggcttttccgacgatctattgcgcgag
ctgggcagggatttcgcaaggaaaggacatgaaacgccgccggttccattggatggcgtc
gatcccctgcttcagggtgagcagtgggtcaagcctgccgtggtggccgaagtgttcttc
cgtggctatagcggcggtggcctgcttcgccaggcgagcctcaaggcgctgcgattcgac
aagtcgcccgacgacctgcaaacgaccgatgccgcggaggacacacccatgatcgccatc
acgcatcccgggcgccttgtgtatcccgacgatggcatcacgaagcagcaggtggtcgat
tactaccgggcagtgatggattggatactgccgcccatcgtggatcggccactttctgtc
gtgcgctgtcccgatggtatcgatggcgccacgttcttccagaagcacgcactttcaggc
ctgaagcgcgcggggcttacccggatcgccgagaagaaaggcggccacgcggaatatctc
tatccgcaggatgccgaggggttgatcgagctggtgcagttcggtgccgtggaattccat
ccctggggagcgcacattgccgatccggatcgggccgatcgcatcgtcttcgatctggat
ccgggcgatggcgtggcctggggaagggtggtggaggcggcccgcacggtgcgttcgctg
ctcgatgcactcggcctggtgtcgttcgtgcgcacttcgggtggcaagggactgcatgtt
gtcgttccactgaaaccggcctcggactgggataccgtcaagctgtttgccagaggcttc
gccgaagccatggcaggcacccagcctacggagttcgtcgcgacagcgaccaagtcgcta
cgcaagggaaaaatctatatcgattacctgaggaatggtcggggcgccacggcaatcgcg
tcgtactccttgagagctcgtgccggagcgccggttgcaacaccgcttcgctgggatgaa
ctgggcaagctgcgctcgggaagtgatttcgatattcattccatgccgaagcggcttgcc
cgactcaagagcgacccgtggagtgcgatagatgaagtgaggcaaagcctggatgacgtg
ggtcgccgttttcatcggtag
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