Leptotrichia buccalis: Lebu_1602
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Entry
Lebu_1602 CDS
T00975
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lba
Leptotrichia buccalis
Pathway
lba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lebu_1602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lba03019
]
Lebu_1602
03009 Ribosome biogenesis [BR:
lba03009
]
Lebu_1602
Enzymes [BR:
lba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lebu_1602
Messenger RNA biogenesis [BR:
lba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lebu_1602
Ribosome biogenesis [BR:
lba03009
]
Prokaryotic type
rRNA helicases
Lebu_1602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACV39474
UniProt:
C7NBE3
LinkDB
All DBs
Position
1692786..1694501
Genome browser
AA seq
571 aa
AA seq
DB search
MQRFEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIP
ILETIDADKTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKAG
VDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLF
FSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQN
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKRVTK
TDIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLIEGRDARQVLASVLR
HVYEDEFLPDNYNEIADVKVKINDKTRLFIALGSKDGYNVGRLLDLLNKKARTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDAKPLVEEATGSRNGGGEKGDKKSGKRDRDRK
RRKKSSEKKSDKSSKVKKDKKKDKKTRRVKK
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagatttgaagattttggcttaagtacggaaatgcttaatgccctaagtaaaaaa
ggatttgaagaaccaagtgaaatacagaagctggttgttcctgaattattgaaagaaaga
actcacttgattggacaggctcagacaggaacagggaaaactgcagcttttggtattcca
atactggaaactattgacgctgataaaacagtcagagctttaattttggcaccgacaagg
gagcttgcaaatcaagtttctgatgaaatttattcattaaaaggagaaaaagatataaaa
gttcttgctgtttatggaggagcttctattgaaaaccaaataaaaagattaaaagctgga
gtagatattgttgtaggaactccaggacgtgttatggatttaataaataaaaaagttctg
aaagtaaatggcttagactatttcgtgctggatgaagcagatgaaatgcttaatatgggg
tttttggaagatattgaagaaattttagaaaaaactaatgacgagaaaaaaatgttattc
ttttcagccacaattcctaaagcaattttagcgattgcaaaaagatttatgcctgaacac
aaactgttaaaagttgaaaaaaaggaacttacaacaaacttaacagaacaaatctattat
gaagtaaaacaagaagataaatttgaagcactatgcagagttttagattatgaacaaaac
ttttatggaattgttttctgccgtacaaaatcagaagttgacgatgttacaaataaattg
aaagcaagaaactatgatgcagaatgtattcacggagatattactcaagctctaagacaa
aaagcacttgatttgttcaagaaacaaatattgacaatattagttgctacggacgttgcc
gctcgtggaattgatgtaagcaacttaacccatgttattaactactctatcccgcaggaa
gctgaatcttacgttcacagaatcggtagaacaggacgtgctggtcataagggaattgca
ataacttttgtaactccaagagaagcaagcaaacttgcccaaattaaacgagttacaaaa
actgacattaaaagagaagacattccaaacgtggaagaaattctggaagctaaaaaagaa
gcattagttgcttatgtagacgaaattatcaaagaaagcgattttaatgcttatgaggag
cttgctcaaagattgattgaaggaagagacgctagacaagtgcttgcttctgttttaaga
cacgtttatgaagatgaatttttaccagataattacaatgaaattgcagatgtaaaagta
aaaattaacgataagacaagattattcattgcacttggaagcaaagacggctataacgta
ggaagacttcttgatttgttaaataaaaaggcaagaacacctggaagaaaagtaaaagat
gtaaaaattatggacaaatactcttttatcacagtaccgttacaagaagccgaatatata
atgcgggcattaaattctaaaaaagatgcaaaaccgcttgttgaagaagctactggaagc
agaaatggtggcggtgaaaaaggtgataaaaaatctggaaaaagagatagagacagaaaa
cgaagaaaaaaatcttctgaaaaaaaatctgataaatcttcaaaagtaaaaaaagataaa
aagaaagataaaaaaacaagaagagtgaaaaaataa
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