Laccaria bicolor: LACBIDRAFT_299655
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Entry
LACBIDRAFT_299655 CDS
T01044
Name
(RefSeq) retrovirus-related pol polyprotein
Organism
lbc
Laccaria bicolor
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RVT_2
Retrotran_gag_2
gag_pre-integrs
rve
RVT_3
Motif
Other DBs
NCBI-GeneID:
6078310
NCBI-ProteinID:
XP_001882498
JGI:
299655
UniProt:
B0DF37
LinkDB
All DBs
AA seq
1450 aa
AA seq
DB search
MSSANSNPPIFPEAEKFDGTNFGTFETLITIAASSRGVLGYLQGTITNPAPYPNPTTLNY
TPTLPNVPLPDDPTPWYSTTPSGAEWAMRDAWARALLLYNTKNAVGLGLKLDGTAAEAWN
SLTSQYKVSSDLAMITAQRDLRNITFTDGNDFPTHISNLRTKWVTANNAGAKINDADFRM
VILSSLPASWDSVVGTLYEAKSSADVISRLTIHWNRIDRSKSVANPATTVTALQADTRKP
RSQLLCANQNCGRRGHTIANCYWRGGGKEGQFPPGFGQRGGARGSTPNNATPNTSSVTAA
LTDATPTSEITLALVSDMGHRNYLLTEDVKVVSTVGDEVVDIHAPGEDLLASRDCVLDSY
PHGAWGCTHALAATTNRGEHNVPTYADSAANKHCFVNRSDFSTYHALSQPDEGQSANKGG
QFRIVGHGAVTKTIISGSLRTTLTFKHAVHTPDLIANLVSISKLDEANCWTLFGGGGVTF
YDMHEGQKRTLMKGTGNNGMYLLNVEPLTHALTACSLNKPTSLDTWHRRLGHAGVHSITD
MARRGLVDGLNVLGDVKLDGKCEDCIYGKQTARPYDGAVEPETEVLEWVYGDLWGPARVR
SVGGAVYMFVLNDGGSSYRVGYFLTSKSGDATLDAFSEYHTRSERETGKKLIRLRVDMGS
EFFNEKWREYTTRHGIIVEFSAPYAHGQNGVAERGMRIIIKGVRCVLADSGLPPSLWADA
AAYIIYTRNLIPSARHPRLIPAEKWTNKRQDISHLRPFGCIAYAKIPAEISISKLAPRSI
KYALIGYFGRGTYKLWDRASGTTIKSRDVIFEEGHGHRTIPDDGDMPPLVIIDDEDDFDD
DTPPTTTSSVDSTDPGAVVVPRKPLAPRPRPTDPPLHPNATTPTVPAEATPTPTPLPDAP
TPTVPRRSARLADLGTGAPTDTTALHTTLPDSQVPRSYWEAITRPELWKPAMDTEWGVLR
ERGVFELVDAPPEAHIIDSMWVFTNKYDANGNIIRRKARLVAKGYTQIPGLDYDQTYASV
VRLESFRIVAAIAASLDLHIWQVDIVAAFLYSTNKFTTYMRQPPGFVVPGEERKVLRVVK
TLYGMMQGGYDFQVEMSGAYESLGYYKSLADPCVHSRTIEGVQTITSTYTDDIFGASSTK
EGAERAKKEIEACFEIKDVGDLGYILGIHFEKDENTGAISLSQEAYIRRILERFGMLHCN
AKPTPLPSGITLSESDCPKTDEDRHYMKDKPYREALGSCMWAQVATRPDIAYALSVLARF
QGNPGPAHWKAMLHLLAYLKGTIGYKITYNRGGSLDPIGFVDADYAGDVDTRRSTSGYVF
TIAGGPVSWSAKRQATVALSTTEAEYMALTHAAQQALWMYSFMSEIGLARKFPAILHGDN
AASIALTLNTKGHARAKHIDIRHHYIRERVAEGEIGLVQIPSEENLADIFTKPLPRITHQ
KLVRALKLDS
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgcaaacagcaacccgcctattttccccgaggcagaaaaatttgacggtacc
aattttggcacattcgaaacacttattaccatcgcggctagcagccgaggcgtactgggg
tatttacaaggaactatcaccaaccctgctccttatccaaaccccacgaccttaaactac
acccctacgttaccaaatgtcccgctcccggatgatcccactccatggtactccactaca
ccctcaggtgcagagtgggccatgcgcgacgcctgggcacgtgcattgctcctctacaac
actaaaaatgctgtcgggctgggactcaagctcgatggtacagctgcagaagcttggaac
tcactcacctcccaatacaaagtctcttccgacctcgccatgatcaccgctcaacgtgac
ctccgaaatatcactttcaccgacgggaatgacttccctacccatatttccaacctgcgt
accaaatgggtaacggcgaacaatgccggcgcgaagataaatgatgcggatttccgtatg
gtcatcctgtcctcgctccctgcatcctgggatagtgttgtaggcacgctttatgaagcg
aagtcctcagcggacgtgatcagtcgtctgacgattcactggaaccgaattgaccgctcc
aagtccgtcgcaaacccagctacaactgtcacagcactccaagcagacacgaggaagcca
cgaagtcagttactgtgcgccaaccagaattgcggacgacggggacataccatagcaaat
tgctactggcgcggcggaggaaaagagggtcaatttcctccgggttttggacagcgcggt
ggtgcgcgcggttcaacgcccaacaacgccactccaaatacctcgtcggtcactgcagcc
ctcacagacgccacacccacctctgaaataaccctcgctctcgtctcggacatgggccat
cgcaattatctgttgactgaagatgtgaaggtcgtctcaactgttggagacgaggttgta
gacatccacgcacctggggaggacctcctcgcgtcgagggactgcgtcctggactcatac
ccccatggtgcctggggatgcacacatgcgttagccgcaacgactaaccgaggggaacac
aacgtacccacttacgccgactctgcagcaaacaaacattgcttcgtaaatcggtcggac
ttctccacctaccacgccttgtcccagcccgacgaaggacaatctgcaaataaagggggt
cagtttcgcattgtaggacacggcgccgtcaccaaaaccataatctccggatcactgagg
acgacgctcacatttaaacatgctgtacacacccccgacctcattgcgaatcttgtctcc
atcagcaagttggatgaagccaactgctggacactctttggagggggaggggtcaccttc
tatgatatgcatgaaggacagaagaggacgctcatgaaaggtacaggaaacaatggaatg
taccttctcaatgtggaaccgttgacccacgccctcactgcgtgctctctcaacaaaccc
accagtcttgatacatggcaccggcgcctgggacacgctggcgtccattccatcactgac
atggctagacgaggcctagttgacggtcttaacgtcttgggggatgtgaaactcgatggg
aagtgcgaggattgcatctacggcaagcaaacggcgcgaccttatgatggggcggtcgaa
cctgagacggaggtgctggagtgggtatacggagacttatggggacctgcccgtgtgcgc
tctgttgggggagcagtatacatgttcgtactgaatgatggcgggtcctcttaccgtgtg
ggatatttcctcacctccaagtctggcgacgcgacacttgatgccttcagtgaataccac
acgaggtcggaacgtgagacggggaagaagctcattcgcctgagggttgatatggggagt
gagttcttcaacgagaagtggagggaatataccacgaggcacggaatcatcgtggaattt
agcgcaccatatgcccacggccaaaatggggtggcagaacgtgggatgagaatcatcatc
aaaggtgtgcgctgtgtcctcgctgattccggacttcccccctcactctgggctgatgcc
gccgcctacatcatatacacacgtaacctcattccgtccgctcgccatcctagacttatt
cctgctgagaagtggaccaacaaacgacaggacatatcccacctacgcccatttggatgc
attgcgtacgccaagataccggcagagataagcatatcgaagttagcgcctcgatcaatc
aaatatgccttgattggttacttcggacgcggaacctataagctatgggatcgggcatca
ggtacgaccattaagagtcgtgatgtcatcttcgaagaaggccacggacatcgtactatt
cccgacgacggcgacatgcctcctctcgttattattgacgacgaggatgacttcgacgat
gacaccccaccaacgactacctccagcgtagactctacagaccctggcgctgtggttgtc
ccaaggaaacctcttgcccctcgtcctcggcccactgacccacctttacatcctaacgcc
acaacgcccactgtaccagcagaggctactcccacgcccacaccactacctgatgcccca
acaccaaccgtacctaggcgctctgcacgtctcgctgatttaggaactggggcacccaca
gacacgaccgccctccacacgacactcccagattcccaggtaccgcgcagctactgggaa
gcaatcactaggcctgagctatggaagccggcaatggacacagagtggggtgttttgagg
gagaggggcgtatttgagctggtggatgctccacctgaggcgcacatcatagattcaatg
tgggtattcacgaacaagtacgacgctaacggaaacatcatcagacgcaaggcccgccta
gtcgcaaaaggatatacccagatcccaggcctcgattacgaccagacgtacgcttccgtc
gttcgtctggagtcctttcgcattgtcgccgccattgcagcctcactcgacctccacatt
tggcaagtggacatcgttgccgcttttctgtacagcacaaacaagttcaccacttatatg
cgccagccgcccggttttgtcgtcccgggggaggagagaaaggttctacgggtcgtcaaa
acattgtatggtatgatgcaaggaggctacgacttccaggtcgaaatgtcaggcgcgtat
gaatctctgggatattacaagtcactcgccgacccatgcgtccactcccgcaccattgaa
ggggtacagaccattaccagcacttataccgacgacatctttggcgcgtcttcaaccaag
gaaggggcggagagggcgaagaaggagattgaggcctgcttcgagattaaggatgtgggg
gacctcggttacatcttggggatccattttgagaaagacgagaacaccggtgcgatctca
ctatctcaggaagcttacattcgacgcatactagagcgtttcggcatgcttcactgcaac
gccaaacccaccccacttccttccggcatcacattatccgaatccgactgccccaaaaca
gatgaagaccgtcattacatgaaggacaaaccatatcgcgaagctctcggctcctgcatg
tgggctcaagtagccacgcgccctgacatcgcctatgccctcagcgtactcgcgcgcttc
cagggaaatcctggtccagcacactggaaggcgatgctccatctcctcgcctatctcaag
gggacgatcggctacaaaatcacttacaaccggggaggcagccttgaccccatcggcttc
gtcgacgcagactacgcaggagacgttgacacgcgtcgatccacatcgggatacgtattc
acaatagctggtggacccgtatcttggagcgcgaagcgacaagctacagttgccctctcc
accaccgaggcagagtacatggcgctcacacacgccgcacaacaggcactgtggatgtat
tccttcatgtcagagatcggtctcgctcgaaaattccctgccatccttcacggtgacaac
gccgcttccatcgccctcaccctcaataccaaaggacacgcacgtgcaaaacacattgac
atacggcaccactacatcagggaacgagtagcggaaggagaaattgggctcgtacagatc
ccatccgaggaaaacctcgccgacatcttcacaaaaccactccctcgcatcacccatcaa
aagctcgttcgagcactcaagctggactcttga
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