Lacticaseibacillus paracasei ATCC 334: LSEI_2562
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Entry
LSEI_2562 CDS
T00407
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSEI_2562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lca03019
]
LSEI_2562
03009 Ribosome biogenesis [BR:
lca03009
]
LSEI_2562
Enzymes [BR:
lca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSEI_2562
Messenger RNA biogenesis [BR:
lca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSEI_2562
Ribosome biogenesis [BR:
lca03009
]
Prokaryotic type
rRNA helicases
LSEI_2562
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABJ71285
UniProt:
Q034T7
LinkDB
All DBs
Position
complement(2543395..2544903)
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AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL
QNIDKADRSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHP
QIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLF
SATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLETIKAQVEANDTEKYEAMAESLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPHRGRSNHGHGNNRGGYKGGYKGKRREGGYQGNRDNKRSYD
KKRNFSDKRKNVKRSFKIRNGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcccagtcaggt
tttgaggaagcgacgccgattcaagcggagacgatcccactggttctggcaggcaaagat
gtgatcggtcaagcacagaccggtaccgggaaaacggcagcgtttggcttgccgatcctg
caaaacatcgataaggctgaccggagtatccaagcattggtcatttccccaactcgggaa
ttggcgattcagacccaagaagaactttatcgtttaggccaagataagaaaatcaaggtc
caggcagtgtacggcggtgccgacattcgccggcaaattcgtcaattatcagaacaccca
caaattgtggtggggacaccaggtcgaatccttgaccatattggccgtcacaccctgaag
ttgcaaaatcttaaagtcttggtattagacgaagcagatgaaatgctcgacatgggcttc
atcgatgacattgaaaagattgttgaacaaatgccaaccgcgcgtcagactttgctgttt
tctgcaacgattcctgcttccatcatgcgtttgaccaataagttcatgcatgaaccggtc
accgttaagattaaggcaaaggaactcacagctgataccgttgaacagtattatgtccgt
gcaaaagactacgaaaagttcgatgtcatgactcgtctgttcgatgttcaagacccagac
ttggctttgatctttggtcggaccaagcgtcgtgttgatgaactaacccgtggtctaaag
gcgcgtggttatcgggcagaaggcattcatggtgacttgacacagcaaaaacggatgagc
gttttgcgccagttcaagagtggccaattggacttcctagtggctactgatgtcgccgct
cgtggtctggatatttccggtgtcacccatgtttacaactatgacattccgcaagatcct
gattcctatgttcatcgtatcggccggaccggtcgtgcaggtcacaagggtgtttccgtc
accttcgtcaccccaaacgaaatcgaatatttgcacacgatcgaagacttgaccaagaag
cggatgctgccgatgaaaccaccaacagcagaagaagcattgatgggccagatctccagc
ggtttagaaacgatcaaggcacaagtcgaagctaacgatactgaaaagtacgaagctatg
gctgaatccttgttggaaaactacaccccgttacagttggtttccgcttatcttaaggca
gtcagcccggatgatgccagtgccgttccggttaaaatcacgccagaacgtccgctgcca
catcgcggtcgcagcaatcacggtcacggcaataatcgtggcggttataaaggcggttac
aagggtaagcgtcgcgaaggcggctatcaaggcaaccgtgataataagcgcagttacgac
aaaaaacgcaacttcagcgataaacgcaagaatgttaagcgtagtttcaaaatccgtaat
ggcgaatga
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