Legionella clemsonensis: clem_13480
Help
Entry
clem_13480 CDS
T05016
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lcd
Legionella clemsonensis
Pathway
lcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
clem_13480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcd03021
]
clem_13480 (rpoC)
03400 DNA repair and recombination proteins [BR:
lcd03400
]
clem_13480 (rpoC)
Enzymes [BR:
lcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
clem_13480 (rpoC)
Transcription machinery [BR:
lcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
clem_13480 (rpoC)
DNA repair and recombination proteins [BR:
lcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
clem_13480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASQ47229
UniProt:
A0A222P5W9
LinkDB
All DBs
Position
complement(2975264..2979502)
Genome browser
AA seq
1412 aa
AA seq
DB search
MANLEPMRKPPVMSDLLGILKQQGQSEEFDAIKIALASPDLIRSWSYGEVKKPETINYRT
FKPERDGLFCAKTFGPVKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIELA
SPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEVYLDA
MEQYGDEFDARMGAEAIRDLLRQIDLEEEIKSLREELPTTNSETKIKKITKRLKLLEAFQ
ESGNKPEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAP
DIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVD
YSGRSVIVVGPTLRLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREDPVV
WDILDDVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAV
HVPLTLEAQLEARSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTRERVNAKGEGKIFA
SPQEAQNFYEAGYVDIHAKVKIRMPREDAEGYHLVETTVGRAILSDILPEGMSFSLINRA
MTKKAISKVVDTCYRKFGLKETVIFADQLMYTGFKFATRAGASIGIEDMEIPDDKASIIE
QADNEVREIEAQYRSGLVTNGERYNKVIDIWSRTNEMVAKSMMAKIATEEVTTRDGKTVR
QESFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTEHGILMQPLIEGGDIVEPL
HERVLGRVVATDVYIPNQAEPIVTAGTLLDEDWVEKLEKFGVDQVLVRSPITCETRFGLC
ASCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQIKNK
GIIRLHNIKTVSHENSNLVAVSRSGEVSIVDDFGRERERYKLPYGAVLTVHDNMSAEAGQ
IIATWDPHTHPVISEVSGKLKFVDLIEGLTMNRQTDELTGLSNIVVIDAKQRSAAGRDLR
PMVKLVSDDGEDIYLAGTNVPAQYYLPVDAIINFEDGSAVGIGDVIARIPQERSKTRDIT
GGLPRVADLFEARKPKDAAVMAEVSGLVNFGKETKGKRRLIITASEHHSHEELIPKWRHI
SVFEGEHVERGEVIADGPLNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHIEVI
VRQMLRKRVITYAGDSKFLVGEQIEESVMLQENDKLAAEGKEIAQGTPILLGITKASLAT
ESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLIPAGTGYTYHQSRKAKRAKA
IAAGSEQGTHTVTASDVEHALSEALNADHHDH
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
ttggctaatctcgaaccaatgagaaaaccacctgtgatgagtgatttgcttggcatcctc
aaacaacaaggtcaaagtgaagagtttgatgcgattaaaattgcgcttgcttcacccgat
ttaattcgttcatggtcttatggcgaagttaaaaagcctgagactataaattatagaacc
tttaagcctgagcgtgacggtctgttttgtgctaagacgtttgggcctgttaaagattat
gaatgcctgtgtggtaaatacaagcgactcaagcatcgtggtgttatttgcgaaaaatgc
ggtgttgagcttgcacttgctaaagttcgccgtgaaagaatgggccatattgaactagca
agcccagttgcacatatatggttcctcaagtcattaccttctcgcatcggcttgctctta
gacatgacgcttcgtgatattgagcgcgtgctatattttgaagcatttgttgttgttgat
ccaggtatgaccgaattagaacgaggtcaattgctcaatgatgaagtgtatcttgatgct
atggagcaatatggtgacgaatttgatgcacgtatgggtgcagaagcaattcgtgactta
cttcgccaaatcgatttggaagaagaaattaaatcgctccgtgaagagttaccaactact
aattcagaaacaaagattaagaaaatcaccaagcgattaaaattactcgaagccttccag
gaatcaggcaataagcctgaatggatgatcatggatgtattgccggttctgccgccagat
ctgcgacccttggtaccattagatggtggacgctttgctacctctgatttaaatgatctc
tatcgtcgagtcattaatcgtaataatcgattaaaaagacttcttgatttaaacgcgcct
gacattattgtgcgtaatgagaagcgaatgctgcaagagtctgtggatgctcttcttgat
aatggtcgtcgtggtcgtgctattacaggtactaataagcgtccattgaaatctttggct
gacatgattaaaggaaagcaaggtcgttttagacaaaacttgcttggtaagcgggtggat
tattccggtcgttctgtaattgtggttggtccgactttacgtttgcatcaatgtggctta
cctaaaaagatggcattagaactctttaagccctttatctttagcaaattggaatttcgt
ggtttagcaactacgattaaagctgccaaaaaaatggttgagcgtgaggatccagttgtt
tgggatattttggatgacgtaattcgtgaacatcctattctgctcaaccgtgcgccaact
ttgcaccgcttgggtattcaggcatttgaaccagttttgattgaaggtaaagcaatacaa
ttacatcccttagtttgtactgcttacaatgctgacttcgacggtgaccagatggccgtg
catgtgccattgacacttgaagcacagttagaagctcgttcactcatgatgtcgacaaat
aatattttgtccccagcgagtggtgaacctattattgtacctagccaagacgtggtactc
ggactgtattatttaactcgagaacgcgtaaatgcgaaaggtgaaggtaaaatttttgcc
agccctcaagaggctcaaaatttttacgaagcaggttatgtggatatccacgccaaagta
aaaattagaatgcctcgtgaagatgctgaaggttaccatttagttgaaacgacagtgggg
cgtgcaattctttctgatattttaccagaaggaatgtcattttctctgataaatagagcg
atgactaaaaaagccatatcgaaagtagttgatacttgctatcgtaagtttggtttaaaa
gaaactgttatttttgctgaccagctgatgtatacaggctttaagtttgctacgcgagca
ggtgcttctattggtattgaagatatggagataccagatgataaggcatcaattattgag
caagcagataatgaggttcgcgaaattgaagctcagtatcgttcaggtttggtaacgaat
ggtgagcgatacaataaagttatcgatatttggtcacgtaccaatgaaatggttgccaag
tcaatgatggcaaaaattgcaacggaagaagttacaacgcgtgatggtaaaacagtacgt
caagaatcctttaatccaatttttatgatggctgactcgggcgcaaggggatctgctgct
cagattagacagcttgctggtatgaggggattaatggcagctcctgatggttcaattatt
gaaacaccaattactgcaaatttccgtgaagggcttaatgtattccaatactttatttca
actcacggtgcccgtaagggtcttgcagatacagctttaaaaacagcgaactcaggatat
ctgacacgtcgtctggtagacgttgcacaagacgtagtgattacagaagatgattgtggc
actgagcatggtattctaatgcaaccattgattgaaggtggagacattgttgagccgtta
catgagcgagtcttaggtcgtgttgttgcgacggatgtttatattcccaatcaggccgaa
cccattgtcactgctggaacacttcttgatgaagactgggttgaaaaacttgaaaagttt
ggtgttgatcaggtgctggttcgttctcctattacctgtgaaactcgctttggtctctgt
gcaagttgttatggtcgagatctggctcgtggtcatttagttaataccggtgaagcagta
ggtatcattgctgcacaatcaatcggtgagcctggtacacagttaaccatgcgtaccttc
catattggaggtgctgcatcaagagctactgctgcaaataatattcaaattaagaataag
gggattatccgcctgcataatattaagacagtatctcatgaaaacagtaatctggttgct
gtatcccgttcaggggaagtatcaattgttgatgatttcggacgtgagcgtgagcgttat
aaattgccttatggtgcagttttaacggttcatgacaatatgtcagcagaagcaggacaa
atcattgcaacctgggatccacatactcacccagttatttcagaagtaagtggtaaatta
aaatttgtggatctgatagagggtctgacaatgaatcgtcagacagatgaattaactggc
ttgagtaacatagtcgttattgatgctaagcaacgtagtgctgctggtagagatctgcgg
ccaatggttaaacttgtctctgatgatggcgaagacatttatctggctggtacaaatgtt
cctgcgcagtattatttacctgttgatgccattattaattttgaagacggaagtgctgtt
ggtattggtgatgtaatcgcccgtattcctcaagagcgctccaaaactcgcgatattacc
ggaggtctacccagagtagcagacctttttgaagctagaaaaccaaaagatgccgctgta
atggctgaagtttctggtctggttaactttggcaaagaaactaaaggtaagcgacgttta
ataattactgcatcagagcatcattctcatgaagagttaattcctaaatggcgtcatatc
tcagtctttgagggtgagcatgtagagcgcggtgaggtgatcgcggatggtccacttaat
ccacatgatattttacgtctgctgggagtgggtgcacttgcaaattatatagttaatgaa
gttcaagacgtttatcgtttgcaaggggtgaaaattaatgacaaacacatcgaagtgatt
gttcgacaaatgttacgcaaacgcgtgatcacttatgcgggtgattcaaaattcctggta
ggtgaacagattgaagaaagcgtaatgttgcaagaaaacgacaagctggccgcagaaggt
aaagaaatagctcaaggtacacctatcttattaggtattactaaagcgtccttagcaaca
gaatctttcatctcagccgcatcattccaggagactacccgtgtcttgactgaggcagca
gtgagtggaaaagtggatgagctgcgtggcttgaaggaaaacgtaatggtagggcgcctg
attccagctggaacaggctacacttatcatcaaagccgcaaggcaaaacgcgcaaaagct
attgctgcaggaagtgagcaaggtacgcatacggtgactgcgagtgatgtagaacatgca
ttaagtgaagcgcttaatgctgatcatcatgatcattga
DBGET
integrated database retrieval system
