Lates calcarifer (barramundi perch): 108873599
Help
Entry
108873599 CDS
T04895
Symbol
smpd2b
Name
(RefSeq) sphingomyelin phosphodiesterase 2
KO
K12351
sphingomyelin phosphodiesterase 2 [EC:
3.1.4.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00600
Sphingolipid metabolism
lcf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
108873599 (smpd2b)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.12 sphingomyelin phosphodiesterase
108873599 (smpd2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
108873599
NCBI-ProteinID:
XP_018517403
LinkDB
All DBs
Position
LG12:complement(7324384..7332297)
Genome browser
AA seq
436 aa
AA seq
DB search
MSNADSVRVRVFSLNCWGIHYLSKHCGQRYDMIGDMLSKGEHDIVLLQEVWSEKDHLSLK
KKLACSHPHSHYFKSGVIGSGLAIFSKHRILDTFLYRYSLNGYPYMAHHGDWFGGKAVGM
AVLSIGSLTANVYVTHLHAEYCREKDSYLPHRVVQAWELQQFVRHTSAGADVVILGGDLN
MHPQDLGNRLLRSYTGLRDSYLETAKFDGCEDGMTLIADNPFTCKKELVPFEKGIRIDYI
LFKGSSKTDIFCDSMSTTKGCVPDHPFPYSDHEALTSELRLESHTPPEVGKDEQSKDQDS
AGKVAELVDIVTEARTEVKVGLHCAERKRCTAARTGVMGLALLFLELAIATVSWLALGAE
QPFPRTSFYLLAALCFAILLTTSLLYIFYTMELKSLQGAEDQMRLAVGSLQEKLRGFPLA
QPHNVQRKPPVGDPEE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgcagactctgtgagggtccgggtcttctctctgaactgctgggggatccac
taccttagcaaacactgtggtcagcgctatgacatgattggagatatgttgagcaaggga
gagcatgatattgtcttactgcaagaggtgtggagtgagaaagaccacctgtccttgaaa
aagaaacttgcctgtagtcatcctcactcccattacttcaaaagtggagttataggaagt
ggactggccattttctccaaacacagaatccttgacacatttctttatcgctactcactg
aatggttatccatacatggcacaccatggagactggtttgggggtaaagctgttgggatg
gctgtcttaagcattggcagcctgactgcaaatgtctatgtgactcatctgcatgcagag
tactgcagagagaaggactcttatctacctcacagagtggttcaggcctgggagctgcag
cagtttgttcggcacacctctgctggagcagatgtggtgattttaggcggtgacctcaac
atgcaccctcaggacctcggcaacagactgctgaggtcttacactggactccgagactct
tatttagagactgctaaatttgatggatgtgaggatggtatgactcttatagctgacaac
ccttttacttgtaaaaaggagcttgttccctttgaaaagggaatccgaattgactacatc
ctgttcaagggatcttccaaaacggatattttttgtgattccatgtccaccaccaaaggc
tgcgtccctgaccatccttttccatactccgaccacgaggctctgacttctgaactcagg
ctggagtcacacactccacctgaggttggaaaagacgagcaatcaaaagatcaggactct
gctgggaaggtggctgagttggtcgacattgtgacagaggcccgtactgaagtcaaagtg
ggcttgcactgcgcagagaggaagcgctgcacagcagcacgcactggagtaatggggttg
gccctgctgttcctggagctggccatcgccaccgtgtcctggttggctctgggagccgaa
caacccttcccccgtacctccttctacttgctggctgcgctgtgcttcgccatcctgctc
accacctctctgctgtacatcttctacaccatggagctgaaatctcttcagggggctgaa
gaccagatgagactggctgtaggaagtctgcaggagaagctcaggggttttcctctggct
cagcctcacaacgtccagcggaagccaccagtgggtgacccagaggaataa
DBGET
integrated database retrieval system
