Lates calcarifer (barramundi perch): 108876897
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Entry
108876897 CDS
T04895
Name
(RefSeq) TATA-box-binding protein isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108876897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108876897
03021 Transcription machinery [BR:
lcf03021
]
108876897
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
108876897
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108876897
RNA polymerase III system
TFIIIB
108876897
RNA polymerase I system
SL1/TIF-1B
108876897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-GeneID:
108876897
NCBI-ProteinID:
XP_018522210
UniProt:
A0A4W6G126
LinkDB
All DBs
Position
LG2:complement(26481346..26486621)
Genome browser
AA seq
309 aa
AA seq
DB search
MDQNNSIPAFQGLASPQGAMTPGMPIFSPMMPYGSGLTPQPVQNTNSLSILEEQQRQQQQ
QQQQAQQANTVHIISPGLPGTSGQTPQLFHSQTVAGSTTTALPGNTPLYNTPLTPMTPIT
PATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTT
ALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRL
EGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYP
ILKGFRKTT
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggaccagaacaacagtataccagccttccaggggctggcctcccctcagggcgccatg
accccaggcatgccaatattcagtcccatgatgccatatggctcaggcctgacacctcag
ccggtccagaacaccaacagtctgtctatactggaagaacagcagaggcaacaacagcag
cagcaacagcaggcgcagcaggccaacacagttcacattatatctccaggcctgccagga
acatcggggcagacccctcagcttttccactcccagacagtagcgggctcaaccaccaca
gcactaccagggaacaccccgctctacaacacaccgctgactcccatgacccctatcaca
ccggccacaccggcctccgagagctcgggaatagtaccacagctacaaaacattgtatct
accgtgaatctgggctgtaaattggacttgaagaccatcgccctgagagccaggaatgca
gagtataacccaaagcgttttgctgcggtcatcatgagaatacgagaacccaggaccact
gccctcatcttcagctctgggaagatggtttgcactggagccaagagtgaggagcagtca
aggttagcagccagaaagtacgctcgtgtggtgcagaagcttggttttcctgccaagttc
ctggactttaagattcagaacatggtgggcagctgtgatgtgaagttccccatccggctg
gagggattagtccttacccatcagcagtttagcagttatgagcccgagctgtttccaggg
ctgatttacagaatgatcaaacccagaatcgtcctgctcatctttgtttctgggaaagtt
gtactcacaggtgccaaggtgagagcagagatctatgaggcatttgaaaacatctacccc
atcctcaaaggcttccgcaagacaacgtag
DBGET
integrated database retrieval system
