Lates calcarifer (barramundi perch): 108880121
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Entry
108880121 CDS
T04895
Name
(RefSeq) methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
KO
K01968
3-methylcrotonyl-CoA carboxylase alpha subunit [EC:
6.4.1.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00280
Valine, leucine and isoleucine degradation
lcf01100
Metabolic pathways
Module
lcf_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
108880121
Enzymes [BR:
lcf01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
108880121
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GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
ATP-grasp
RimK
Biotin_lipoyl_2
ATP-grasp_3
ATPgrasp_ST
HlyD_3
RnfC_N
MCC_alpha_BT
GARS_A
Motif
Other DBs
NCBI-GeneID:
108880121
NCBI-ProteinID:
XP_018527075
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Position
LG17:23173297..23182697
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AA seq
716 aa
AA seq
DB search
MAAVILSFPTLQGLRIFTQKLSWTKRGLRFISGGVGRIEKVLIANRGEIACRVMRTAKKM
GVRSVAVYSEADRHSMHVAMADEAYHIGPPPSQQSYLSMEKVLEVAKKSGSHAVHPGYGF
LSENTEFAEACKQEGIIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIGGYHGEDQSDERL
QAEAAKIGYPVMIKAVRGGGGKGMRIARSDSDFLEQLESARREARKSFNDDVMLVEKFVE
DPRHVEVQVFGDMHGNAVYLFERDCSVQRRHQKIIEEAPGPGISPEVRRKLGEAAVRAAK
AVNYVGAGTVEFIMDAQHNFYFMEMNTRLQVEHPVSEMITGTDLVEWQLRVAAGERLPLL
QDDIILQGHSFEARIYAEDPNNDFLPGAGPLLHLSTPLPDQHTRIETGVREGDEVSAHYD
PMIAKLVVWGEDRSAALKKLRYCLRQYNIVGLNTNIDFLLSLSGHPEFEAGNVSTSFIPQ
HYADLFPTPRAPSGATICQAALGLVLQERKHTQEFTQASTDPFSPFGASSGWRNNIQFNR
NMTLQLGDKKVNVVITYNKHGSYDMQVDEEVYHVTGEVEVEGGASFLHCSVNGVKSRPKL
VILDNTVHLFSTEGSSQVSVPVPKYLAGVSGSGAQGGAVAPMTGTIEKVLVKAGDKVAVG
DPLMVMIAMKMEHMIRAPKSGVIKKVFFSEGSQANRHAPLVELEEEGEDNGDGGSH
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgttattctgagtttccccactctgcagggtctgaggatatttacacaaaaa
ttatcatggaccaaaagaggcttaaggttcatttcaggaggggttggaaggatagagaaa
gtgttgattgccaatcgaggagagatcgcatgtcgtgtgatgcgcacagccaagaagatg
ggcgtccgctctgtggcagtgtacagtgaagcagacagacactccatgcatgtggccatg
gcagatgaagcctaccacattggtcctccaccctcccagcagagttacctctctatggag
aaggttttggaagtggccaagaagtctggatcacatgcggtgcaccctggctatggcttt
ttatcagaaaacacagagtttgcagaggcttgcaaacaggaaggcatcatcttcattggg
ccaccttcctctgccattcgagacatgggcattaagagcacatccaaacacatcatgtca
gctgctggggtgccaatcatcggtggttaccatggagaggaccaatcagacgagaggctg
caagcagaggctgctaagatcggataccctgtaatgattaaagcagtccgtggaggagga
gggaaggggatgcgtattgcacgctcagactctgacttcttagagcagttggagtcggcg
agacgagaagccagaaaatcctttaatgatgacgtcatgctggttgagaagtttgtagag
gaccccaggcatgtggaggttcaggtgtttggagacatgcacggtaacgctgtctatctg
tttgagagagactgcagcgtccagaggagacatcagaaaatcatagaggaagcaccaggg
cctggtatcagtcctgaggttcggaggaaactgggagaagcagcagttagagcagccaag
gctgtcaactacgtaggggcaggtacagttgagtttataatggacgcccagcataacttc
tacttcatggagatgaacaccaggctgcaggtggaacatcctgtgtcagagatgatcact
ggaactgacctggtggagtggcagctcagggtggcagcaggggagcgcctgcctctcctt
caggatgacatcatcttacaggggcactcgtttgaggctcgtatctacgcagaggaccca
aacaacgacttccttccaggagcggggcctctgctgcatctctccacccctctaccagac
cagcacactcgcatagagactggagtcagggagggcgatgaggtgtcagcacattatgac
ccaatgatcgccaagcttgtggtgtggggagaggaccgatcagctgccttaaagaagctg
cgatactgcttacgacagtataatatcgtgggactgaacactaacatagattttctgctg
agtctttcgggccacccagagtttgaggctggaaatgtgagcaccagcttcattccccag
cactacgccgacctcttccccactccgagagctccctctggggcaactatctgccaggcg
gccctgggtctggtgctgcaggagaggaaacacacacaggagttcacacaagcctccacc
gatcccttctccccatttggtgctagcagtggatggagaaacaacattcagtttaacaga
aatatgacactacagctgggagacaaaaaagtcaatgtggtcatcacgtataacaaacat
ggaagctatgatatgcaggttgatgaggaggtgtatcatgtgactggagaggtggaggtg
gagggtggagcttcgttcctgcactgttctgtcaatggagtgaaatctcgtcccaaactg
gtgatcctggacaacacagtccacctcttctccacggagggaagctcccaggtgtctgtt
ccagtgcctaaatatctggctggtgtgagtggctctggggcccagggtggagcagtggcc
cccatgactggaactatagagaaggtgctggtgaaggccggagataaagtggctgtagga
gacccactgatggtcatgattgccatgaagatggagcacatgatccgggcgcccaagtca
ggtgtgattaagaaggttttcttcagcgagggctctcaggccaatcgccacgcccctctg
gtggaactggaggaggagggggaggataacggggatggcggcagccactaa
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