Lates calcarifer (barramundi perch): 108882615
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Entry
108882615 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM33 isoform X1
KO
K08883
tripartite motif-containing protein 33 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcf01001
]
108882615
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108882615
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108882615
Protein kinases [BR:
lcf01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
108882615
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108882615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
PHD
zf-RING_UBOX
zf-C3HC4
UvrA_inter
Motif
Other DBs
NCBI-GeneID:
108882615
NCBI-ProteinID:
XP_018530720
LinkDB
All DBs
Position
LG6:complement(6526691..6554995)
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AA seq
1198 aa
AA seq
DB search
MADNKDEEDMKPSANSDSVPSAQDNEQPETKVENALIVIEANTKGGEETEPHDNTNETPT
PTSEGGEVSSGGAAGAGGEANGSGSNAVSPTETSNSTAEPTAAETLVTDAPVAGLTTEMS
PPPTAPAATPVSTPINLLDTCAVCKQSLQSRDCEPKLLPCLHSFCLKCIPQPDRQISVQV
PGPHGQTDTHIVNVMRCSVCHQDYKQSDIIDNYFVKDTTEATSTSDEKAAQVCTSCEDNA
GTIGFCVECGEWLCKTCVEAHQRVKITKDHKIRTKEDADAASDSVGTSGQRPVFCPIHKQ
EPLKLFCETCDTLTCRDCQLLEHKEHRYQFLEEAFQNQKGIIETSIAKLQEKKNYVHYSV
SQVQSRLKELNETHRKVEHEIKIAVFTLINEINKKGKSLLQQLESVTKERSMRLVAQHKD
TTQMAQQIHHVLNFCHWATTTGSSTALLYSKRLILFQLRQLFKARLEPAPQANGVVRFFC
DPTFWAKNVVNLGNLVIEKPPPPAQPPNMMVGGPPISPGQGHPGKHPGQINLAQLRLQHM
QQAAYAQQKQQQQQQQHQQQIQQQMRIASQMSQQHARQAGPTMVQQQPPRLISMQQLPRG
PGGMNGGPGPTMYPSSHHMRLPGPSQGRMPSAQPRLNGQQYAPMMQPQLQRQMSIESEMS
HQRFRFLLQSGHSNPGHAGPFPVASLHNANPTSPTSASMAGAHAHRGPASPIIGPIELIP
SVTNPENLPCLPEIPPIQLEDAGSSNLGHLLSRYITASTQHQLGSVDMNPSPGLSTHSPG
SSGLSNAHTPARPSSTSSTGSRGSCSSAGRAGTGSGAAVEQVKVKQEPGTDDSYSCPATS
LKTERSKDAGRSACMMSSPENSPLPVLGVVCQDSLKALEERIKTEPQSETPCSGLNGSSA
ATSTSTTTTSTTSSSTKNCSSATDPPLTNGNVDKGTEAKESVTSAGTGNPGGKEDDPNED
WCAVCINGGDLLCCDRCPKVFHMKCHVPTIKIFPKGDFLCTFCRSLTSPEIEYCDDSRKI
KGEHSLSPEDQRRCERLLLYIFCHELSVGFREPVPSSVPNYYKIIKQPMDLKKVKKKLQL
RSSQYYKSTQEFVSDMRLVFKNCAKYNEMSRIIQVYDEEKQINTQVGSEMAISGKAVSLY
FEEKLQEMFPGQNFPDSPEPESPDEREKEQEDTDDSEDDFVQPRRKRLKTDEKLVHIK
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaacaaagacgaggaggatatgaaaccgtctgctaattcggactcagtgcct
tcagcacaagataacgagcaaccggagacgaaagtcgaaaatgcgttaatagtcatagaa
gcgaatacaaagggcggcgaagaaacagagccccatgataacaccaacgagacacctaca
cccaccagcgaaggaggggaggttagcagcggtggggctgctggtgcgggaggggaagcc
aacggtagcggtagcaacgccgtcagtccgaccgagaccagcaactccactgcagagcca
acagcagctgaaaccctggtcactgatgctcctgtcgccggactcactactgaaatgtcc
ccccctccgacggctccagcggccacgccggtatccactcccattaatttgctggatacg
tgcgcagtgtgtaaacaaagtcttcagagccgagactgtgaaccaaaacttctgccttgt
ctgcactcattttgcttgaaatgtatcccgcaaccagatagacaaataagtgtacaggtc
cctggaccacacggacaaactgacacacacatagtaaacgttatgcgctgttcggtgtgc
caccaggactacaaacagagcgacattattgacaactactttgtcaaagataccacagag
gccaccagcacatctgatgaaaaggctgctcaggtgtgcacaagctgtgaggacaacgca
ggaaccataggcttttgtgtggagtgtggagaatggctgtgtaagacctgcgtggaggcc
caccagagggtcaaaattactaaggaccacaaaattcgcacaaaggaggatgctgacgct
gcctccgactctgtcggtacgtcaggacagaggcctgttttctgtcccatccacaagcag
gagccactgaagcttttctgtgagacctgtgatacgttgacgtgcagggactgccagctg
ctggagcacaaagagcacaggtaccagttcttggaggaggctttccagaaccagaaaggc
atcattgagaccagcatagccaagctacaggaaaagaaaaactacgtccattactctgtc
tctcaggtgcaaagcaggttaaaagagctgaatgagacacataggaaggtggaacatgaa
atcaaaatcgcagtatttactcttataaatgagatcaacaagaagggaaagtccctgctg
cagcagttggagagcgtgacaaaagagcgcagtatgaggcttgtggctcagcataaggat
accacccagatggcccaacagatccaccatgtcctcaacttctgccactgggccaccact
actggcagcagcacagcgctgctctacagcaagaggctgatcctgttccagcttcgccag
ctcttcaaggctagactggagccagcgcctcaggccaatggagtagtgcgcttcttttgt
gaccccaccttctgggctaaaaacgtggtgaatctaggtaatttggtaattgagaaacca
cctccacctgcgcaaccgcccaatatgatggtaggaggaccacctatttcaccaggccag
ggtcatcccggcaaacacccaggacagatcaacctggcccagcttcgtctgcagcacatg
cagcaggcagcctatgcacagcagaaacaacagcaacaacagcagcagcaccagcagcag
atacagcaacaaatgcgcattgcctcccaaatgtcccagcagcacgccagacaggccggc
ccaaccatggttcagcagcagcctccaaggctcatcagtatgcagcagctaccaagaggg
cctgggggtatgaacggtgggccaggtcccaccatgtacccttcctcccaccacatgcgt
ctgccgggtccatcacagggccgaatgccctcagcccagccgaggcttaatggacagcag
tatgcccccatgatgcagcctcagctacagagacagatgtctatagaatctgagatgagc
caccaaaggtttcgtttcttactacaatcagggcattccaacccagggcacgcaggtcct
ttcccggtggcgtccctccataacgccaaccccacaagtcccaccagtgccagtatggct
ggtgcccacgctcaccgcggccctgccagccccatcataggtcctatcgagctcatcccc
tctgttaccaatcctgagaacctgccctgcctacctgagatccctcccattcagctggag
gatgcaggttctagcaatctcggacacctcctgtctcgctacatcacagccagcacgcag
catcagctgggctcagtcgacatgaacccctcacctggactgtccacacactctcctgga
tcttcaggtctgtcaaatgcccacacgccagcacgaccttcgagcacatccagtacaggc
agcagaggcagctgcagctctgcgggtagggcagggacaggaagtggagctgcggtggag
caggtgaaggtgaagcaggagccgggtacagacgatagctacagctgtccagctacttct
ctgaagacggagcgcagcaaagacgctgggaggagcgcctgcatgatgagcagtcctgag
aacagccccctccctgttttaggggtcgtctgtcaagattccctcaaagctctcgaggaa
cgcatcaaaacagaaccacagtctgagaccccttgttctggactaaatggctccagtgca
gccacatcaacttccaccaccacgacctctactacctcgtcatccaccaagaactgcagc
agtgcaacagaccctccactcactaatggaaatgttgacaaggggacagaggccaaagag
agcgtgacgtctgctggaacaggcaatcctggtgggaaagaggatgaccccaatgaggac
tggtgtgccgtttgtatcaacggtggcgacctgctgtgctgtgaccgctgtcccaaagtg
tttcacatgaaatgtcatgtacccaccataaaaatcttcccaaagggtgacttcctctgc
acgttttgccgaagtctaaccagccctgagatagagtactgcgacgacagcaggaaaatt
aaaggagagcactccctgagtccagaggaccaaaggagatgtgaacgcctcctgctctac
atcttctgtcatgagctcagcgtgggctttagggaacctgttcctagctctgtacccaac
tactacaagatcatcaagcagcccatggacctgaagaaggtgaagaagaagctgcagtta
cggagctcccagtactacaaatccacccaggagtttgtctccgacatgcgcctcgtcttc
aaaaattgtgcaaagtacaatgagatgtctcgaataatccaggtttatgatgaggagaaa
cagattaatacacaggtgggatcagagatggcgatatctgggaaggcggtgagtctgtac
tttgaggagaagctgcaggagatgtttccagggcagaacttcccagactcacctgaaccc
gagtccccagatgagagggagaaggagcaggaggacacggacgactccgaggacgacttt
gtgcagcccagacgcaaacgattaaagacagatgagaaactggtccacatcaaatga
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