Lates calcarifer (barramundi perch): 108886888
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Entry
108886888 CDS
T04895
Symbol
spopla
Name
(RefSeq) speckle-type POZ protein-like A
KO
K10523
speckle-type POZ protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108886888 (spopla)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108886888 (spopla)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
108886888 (spopla)
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Gene cluster
GFIT
Motif
Pfam:
BTB
MATH
BTB_2
KLHL33-like_BTB_POZ
Motif
Other DBs
NCBI-GeneID:
108886888
NCBI-ProteinID:
XP_018537511
UniProt:
A0A4W6DGD0
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Position
LG1:complement(11941939..11954124)
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AA seq
392 aa
AA seq
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MSRVPTPPPPGEMSSGPVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSG
PNDKMKWCLRVNPKGLDDESKDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQ
RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQSNMNMLK
VPECQLSDDLGNLWECSRFTDCSLYVGGQEFKAHKSILAARSPVFNAMFEHEMEESKKNR
VDISDVDPDVFKEMMGFIYTGKAPNLEKMADNLLAAADKYALERLKVMCEEALCNSLSVE
NVADTLILADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNSNHATDIMETAGWKSMI
QSHPHLVAEAFRALASAQCPPFGLPRKRLKQS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgggttcccacccctcctcctcctggggagatgtcaagtggacctgtggcagag
agctggtgttacacacaggtcaaagttgtgaagttttcctacatgtggaccataaacaac
tttagtttttgcagagaagaaatgggtgaggtcttgaagagctcaaccttctcctctggt
cccaatgacaaaatgaaatggtgtctgcgagtcaatccaaaggggcttgatgacgaaagc
aaagactatctgtcattgtatttactacttgttagttgtccaaaaagtgaagtgagagca
aagttcaagttttctttgttgaatgctaagagagaggagacaaaagcgatggaaagccaa
agagcatatagatttgtccaaggtaaagactggggcttcaaaaaatttataaggagagat
ttcctcctcgatgaagccaatggactcttaccagatgacaagctcaccctgttctgtgag
gtcagcgttgtccaggactcagttaacatttcgggccagtccaacatgaacatgctgaaa
gtcccagagtgccagctgtctgatgatctggggaacctatgggagtgttcacgcttcaca
gactgcagcctctatgtgggagggcaggagttcaaagcccacaaatccatccttgcagca
aggtcaccagtatttaatgctatgtttgaacatgaaatggaggaaagtaaaaagaaccgt
gttgacatcagtgatgtggacccagatgtctttaaggaaatgatgggcttcatctataca
ggaaaggccccaaacctggagaagatggcagacaatttgctggcagctgcagataaatat
gctttggagcgtttaaaggtcatgtgtgaagaggccttgtgcaacagcctttcagtggag
aacgtggccgacactctcatcctagcagacttgcacagtgccgagcagctcaaagcacaa
gccatagattttatcaacaggtgcagtgtcctgagacagctgggctgtaaagatggaaag
aactggaatagcaatcatgctacagatataatggagactgcaggctggaagtcaatgatc
cagtcccatcctcacttggtagccgaggcttttcgtgccctggcttcagcacagtgccca
ccctttggtcttcccaggaagcgtctaaaacagtcctga
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