Lates calcarifer (barramundi perch): 108888246
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Entry
108888246 CDS
T04895
Name
(RefSeq) lymphoid enhancer-binding factor 1 isoform X4
KO
K04492
lymphoid enhancer-binding factor 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04310
Wnt signaling pathway
lcf04520
Adherens junction
lcf04916
Melanogenesis
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108888246
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108888246
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
108888246
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108888246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108888246
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
108888246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108888246
NCBI-ProteinID:
XP_018539668
LinkDB
All DBs
Position
LG5:11976314..12018026
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AA seq
367 aa
AA seq
DB search
MPQLSGGGGGDPELCATDEMIPFKDEGDPQKEQIFAELSHSEEEGDLADIKSSLVNESES
SPNSNSHDVSNAARQSQIPQDSYHEKHRDHPDDGKHQDMYSKGHPYPGYPGYIMMSNMNN
DSYMNNGSLSPPMPRTSNKVPVVQPSHAVHPLTPLITYSDEHFAPGSHSGHHPQDGNKQG
MPRHHPGPDMTNFYSLSPGGVGQITPPLGWFSHHMVPGPPGPHATGIPHPAIVNPQVKHE
PPHETDIMHMKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQI
LGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKMQESATGTGQ
RMKTAYI
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgccacagttatcaggcggcggcggtggagacccggagctgtgcgccacggatgaaatg
atcccgttcaaagacgaaggagacccgcagaaggagcagatcttcgccgaactcagccac
tcggaggaagagggagacctggcggacatcaagtcatctctggttaacgagtcggagagc
agccccaacagcaacagtcacgatgtgagtaatgcagctagacagtcccaaataccgcaa
gattcatatcatgaaaaacacagagaccatccggatgatggaaagcaccaagacatgtac
agcaaaggccatccgtacccaggctacccaggctacatcatgatgagtaacatgaacaac
gattcctacatgaacaatggctccctctcgccacccatgcccagaacgtccaacaaagtt
cccgtggtgcagccgtcccatgcagtccacccactcaccccgctcatcacgtacagtgac
gagcacttcgctccgggatctcactccggtcatcacccccaggacggcaacaaacaagga
atgccgaggcatcaccccggaccagacatgaccaacttctactccctatcccctggagga
gtggggcagatcacgccaccgctgggatggttctcacaccacatggtgcccggtccccca
ggtccccatgccacagggattccccacccggccatcgtcaacccacaggtcaaacacgag
ccgccgcatgaaacggacatcatgcacatgaaaccccagcacgaacagagaaaggagcag
gagcccaaaagaccgcacatcaagaagccgctaaacgccttcatgctctacatgaaagag
atgcgtgcgaatgtggtcgcagagtgcacgctgaaggagagcgctgccatcaatcagatc
ctgggacggaggtggcatgctttatctcgggaagagcaagctaagtattatgagttagcc
cgcaaggaacggcagctccacatgcagctctacccaggctggtccgctcgagacaattat
ggaaagaagaagaagcggaagagggagaagatgcaggaatcggccacaggtacaggccag
agaatgaaaacggcgtacatctga
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