Lates calcarifer (barramundi perch): 108897459
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Entry
108897459 CDS
T04895
Symbol
ttc28
Name
(RefSeq) tetratricopeptide repeat protein 28 isoform X1
KO
K24936
tetratricopeptide repeat protein 28
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108897459 (ttc28)
Cilium and associated proteins [BR:
lcf03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
108897459 (ttc28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_1
CHAT
TPR_8
TPR_10
TPR_2
TPR_MalT
TPR_17
TPR_16
Rapsyn_N
RPN7
TPR_11
TPR_9
TPR_14
TPR_6
PUB
TPR_19
Motif
Other DBs
NCBI-GeneID:
108897459
NCBI-ProteinID:
XP_018552617
LinkDB
All DBs
Position
LG9:complement(1394588..1485965)
Genome browser
AA seq
2579 aa
AA seq
DB search
MEKHRTRKEKFSLFGSRSTSRTTNPPSSSSSSSSPVIPSAPTLKRAERPPAYTPPGLSKA
EFLERVRRSNQACQQGEYALAVCLYTEALTADPQNCILYSNRSAAYLRLGQYSTALDDAI
KARLINPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPLR
DSLEPTYQQLQRMKLDKSPFVVVSVIGQELLTHGFHGASVVVLEAGLKIGTCSLKLRGSV
FSALSSAYWSLGNAEKSMAYMQQDLEVTKTLGDQSGECRAHGNLGSALFSKGSYREALAN
HRNQLVLAMKLKDREAASDALSSLGHVYTAIGDYPNALASHKQCVLLARQTQCQLSEARQ
LGNMGAVYTALGDFTNAVQCHEQHLEIAKTLENRREEARAYSNLGSAYHSQRDFDKAISY
HTRVLELAQEQSDRAIEMRAYAGLGHAARCMQDLDRARQYHQHQLEIAQELQDRAAQGRA
SSNLGIIHQMKGEYEAALKLHKSHLSFAQELGDYAAQGRAYGNMGNAYHALGIYDQAVRY
HRQELQISLEVNDRPSQASTHGNLAVAYQALGAHDRALQHYLHHLTIARELRDTQSEARA
LANLGNFHSWRGEYAQALPYYQQYLTLAPGLQDLEGEGKVCHNLGYAHYCLGQYRDAVRY
YEQDLALAKDLQDKLAQAKAYCNLGLAHKALGEYNKAEECQRYLLSLAQALDNTQAVFRA
FGNLGDVCVCRGDLPGAVRFYQQQLTLAQKVSDQKMEADAFSALGSVHRLLRQLDTALSF
HSQELTVRKDLGDQQGECRALGHLAAVHMALGDYATTFQCYETQLGLAQGLRDARLEAQV
HGNMGITKMNMGVFEEAIGYFEQQLAMLQQLSGTESMLDRGRAYGNLADCYDALGDYEEA
IQYYEKYLTVAQSLNHVQDQEKAYRGLGNAHRSMGSLQQALVCFEKRLVVAHELGGEGGG
KAQAYGELGTLHSQLGNYEQALSCLEHQLNIARTAGDKSLEAEASDALGGVYQLMADNET
ALQWHQRALDIAEQTRCVRSQGRAYGNLGLTYEALGNYERAVVFQEQHLSVAAQTNDLIA
KTLAYGSLGRIHHALQNYAQAVMYLQEGLRLAEQLGRREDEAKIRHRLGLSLWASGNLEE
AQHQLYRASVLFETIRHETQHSTDYKLSLFDLQTSSYQALQRVLVSLGRHDEALAIAERG
RTRAFADLLVERQKGSQQAASTDPYIPVTVEHILETVNGQRAMVLYYSLAGGFLYSWLIS
PGTGIVKFSEVYLGETGAEMSEFQDGGGSPQGGGGGGGGGGGGGPLSLEQYICNAREALG
VDSHYSRGCSSSETESEAGDLLEQQFEELNNKLTSAADPTGYLRMVSRNNLFNRSSQSMT
SLYSATVSPVKDNLSSPPCRPSNISKPPLRALYDLLIAPMEGGLMHSSGPVGRHRQLVLV
LEGELYLIPFALLKGSSSNEYLYERFSLISVPSLASLGATVKPPSRRVGPSLCTDGGSVA
AVVGAPRLPSSVMDRWLWGPLPSAQDEALWLGEQLGCHPLTGANATKERVLAALSQAECI
HFATHISWKLAALVLAPGPEHAGGEGAGSRPKEKSPCGASTSGEAVDQDGKVKGSFSKSH
SSPERLRGADETSEDAESVCEVESVCDSPPLQDFLLTAADILGLCLTVKVVVLRLYPESS
SRVSADGVVGLTRAFLAAGVQCVCVSLWPVPIAASKLFTHTFYTALLNGTKASAALTEAM
KTLQSSKHFSHPSNWAGYMLIGNDVKLNSPMSLVGQALAEILQYPERARDALRVLLHLVE
KSLQRIQSGQCNPMYTSQQSVENKVGGVPGWQALLSAVGFRLDFSGSGAGLPAAVFFPTS
DPGDRLQQCSTTLQSLLGLTPPALQALCKLVTASEAGEQLIHKAVKSMVGMLHQVLVQLQ
SGDKEQDFSLAPIQVSISVQLWRLPGCHEFLAALGFDLCEVGQEEVVLKTGKQASRRTMH
FALQSLLALFDSTELPKRLSMDSSSSLESLSSSQSASQPHSLPISFGCYPPQPSFLPPVC
PDNLSCDAISVYSLSSLASSLSFLSRPEPAGSDIISQRSHQQEPDRSRGGAGLYGSHRHS
GGGLLRGRLTNHGGAAGEGEDEEYEGYSIISSEPLGRGGRDCDTLPLPAGHRHGRGGAGR
GANGGHGYPITISSKGSVSTPTSPIKAPPLPLTVSPSPKLRQEISSPQRTGKGKVSSSES
DQSSTETDSTVKSQEERTGPAGQMDPQELAQKILEETQSHMQAVESLQKANIRGKTLRGS
EGREEAQARQPSLSTPTTPTLTPSGGARGFQPSETSAFSRPPSRASLKACSSPLSLSSHL
SPLSASVSTPPPTRPKPPSRSSSLQKISSGYNSPAHSSPSLSLSVKEQGSPFSTASPDVH
AQAELKLKYPTSPYTAHISPSRSPADSAPSPALSYSSTGSVSASSSPANTPELNQSKQDN
KVQAIHNLKTFWANASQKHEVPCPASLLRGGNKKMSTVQKDVLGLLNLSPRHESLSKNVE
APEDQKSSSRTNGHQKLEAKPPPPPPPNAPTNSKGGIRLPSGNGYKFLSPGHFFPSSKC
NT seq
7740 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcacaggacgaggaaagagaagttctccctgtttggttctcgctccaccagc
aggaccaccaaccctccttcatcctcctcctcctcttcgtcccctgtgatcccctcagcg
ccgacgttgaaaagagcagaacgacctcctgcctacaccccacctggcctgagcaaagct
gaattcctggagcgcgtgcgtcgcagtaaccaggcctgccagcagggggagtacgctctg
gctgtgtgtctctacaccgaggccctgactgctgacccccagaactgtatcctgtacagt
aaccgctcggctgcctatctcagactgggccagtacagcaccgctctggacgacgcaatc
aaagcacgtctcatcaaccccaaatggcccaaggcctactttcgtcagggggttgccctg
cagtacctgggtcgacatgccgacgccctggcagcgttcgcctccggcctcgcccaagac
cccaagagtctccagctgctcgtcggcatggtggaggccgccatgaaatcgcccctcaga
gactcccttgagccgacctaccagcagctgcagaggatgaagctggacaagagcccgttc
gtggtcgtgtccgtcatcggtcaggagctgctgacccacggtttccacggggcctctgtc
gtggtgctggaggcggggctgaagatcggcacctgctcgctgaagctgcgtgggtccgtc
ttctcggccctgagctccgcctactggtctctaggcaacgcggagaagagtatggcctac
atgcagcaggacctggaggtcaccaagactttaggtgaccagtcaggtgaatgccgtgct
catgggaacctcggctctgccctcttctccaaaggcagttacagagaggcactggccaac
cacagaaaccagctggttctggccatgaagctcaaggacagagaggctgcgtccgacgct
ctcagcagtctgggccacgtgtacacagctatcggtgactaccccaacgcactggcgagt
cataaacagtgtgtcctgttggcacgacaaacccagtgccagctctccgaggctcggcag
ctggggaacatgggcgccgtgtacacggccctgggagacttcaccaacgctgttcagtgt
cacgaacagcacctggaaatcgcaaagactctggagaaccggcgtgaggaggcgcgggcg
tacagtaacctgggcagtgcctaccactctcagcgggactttgacaaggcgatatcgtac
cataccagagtgctggagctggcacaggagcagagcgacagagcgatcgagatgagggcg
tacgctggtctgggccacgccgcccggtgcatgcaggacctggaccgggcacgacagtat
caccaacaccagctagagatcgctcaggagctgcaggacagagcagcacagggacgagcc
tcttccaacctgggcatcatacaccagatgaagggggagtatgaagcagcactgaagctc
cacaagtcccacctgtccttcgcccaggagctgggtgactacgctgcccaggggagggcc
tatggcaacatgggcaacgcctatcacgctctcggcatctacgaccaagctgtccgctac
caccgccaggaactacagatctcactggaggtgaacgatcgtccatcgcaggcctccacg
cacggtaacctagcggtggcgtaccaggcgctaggcgcccacgaccgggctctccagcac
taccttcaccacctgaccatcgcacgagagcttcgagacactcagagcgaagcgagagcg
ctagcaaacttgggaaacttccacagctggagaggtgaatacgctcaggccttaccgtac
taccaacagtacctgaccctggccccgggtttgcaggatctggagggagaaggcaaagtt
tgccacaacctcggctacgctcactactgcctgggacagtacagagacgctgtcaggtat
tatgagcaggacctggccttggcgaaggacctccaagacaaattagcccaggcaaaagcc
tactgtaaccttggtctggcccacaaagccctgggggagtacaacaaagcagaggagtgt
cagcgatacctgctgtctctggcacaggccctggacaacacgcaggcagttttcagggcc
ttcgggaacctcggcgacgtgtgtgtgtgtcggggggatcttccaggagctgtgaggttc
taccagcagcagttaactctggctcagaaagtcagtgatcagaagatggaggctgacgcc
ttctcagcactgggatcagttcacaggctgctccgccagctggacacagccctgtccttc
cacagccaggaactgaccgtccgaaaggatctaggtgatcagcagggggagtgccgcgcc
ctcggccacctggcggcggtgcacatggcgctgggagactacgctacgaccttccagtgt
tatgagacccagctgggcctggctcaggggctcagggatgcccgtctggaggcccaggtc
cacgggaacatggggatcaccaaaatgaacatgggggtgtttgaagaagctatcggctat
tttgagcagcagctggccatgctgcagcagctgagtgggactgagagcatgctggacaga
ggcagggcctacgggaacctggcagactgctacgacgctctgggagactacgaggaggct
atccagtactacgagaagtacctgactgtggctcagagtctcaaccacgtccaggaccag
gagaaagcctacagaggactcggaaatgcacacaggtctatgggaagtctccagcaggcg
ctggtttgctttgagaagcggctggtggtggcccatgagctgggtggggaaggagggggc
aaggctcaggcctacggagagctgggcaccttacacagccagctgggcaactacgagcag
gccctctcctgcctggagcaccagcttaacatcgcccgcacagcaggggataaatccctg
gaggcagaggcgagcgatgctctcggaggcgtttatcagctgatggcagacaacgagaca
gcgctacagtggcaccagcgggctttggatatagcagagcagaccagatgtgtgaggagc
cagggtcgagcctacggaaacctgggactgacctacgaagccctgggaaactacgagcgg
gccgtggtgtttcaggagcagcacctgagcgtggcagcgcagaccaatgacctgatcgct
aaaactctggcctacgggagcctgggaaggatacaccatgcactgcagaactatgcacag
gctgtgatgtacctacaggaaggtctgcgtctggcagagcagttaggtcgcagagaagat
gaagctaagatacgccatcgcctgggtctgtctctgtgggccagcggaaacctggaagag
gcgcaacaccagttgtacagagcatccgtgctgtttgagacgattcgtcacgagacgcag
cacagcacggattacaagctctctctgtttgatctgcaaaccagctcgtaccaggctctc
cagagagtcctcgtcagcctaggccgacacgatgaggctctggccatagccgagcgcggg
cgaacgcgtgcctttgccgatctgctggtcgaacgccagaaaggaagtcagcaagcggcg
agcacggacccttacattccagtaaccgtagagcacatcctggagacggtcaacggtcag
agggccatggtcctctactattccctggcaggaggttttctgtacagctggctgatctct
ccaggaacaggtatcgtgaagtttagcgaggtgtatctgggagagaccggagcagagatg
tcggagttccaggatggtggtgggagcccacagggaggaggaggaggaggaggaggagga
ggaggaggaggtcctctgtctctggagcagtacatctgcaacgccagagaggctctggga
gtggacagccattacagcagaggttgttccagcagcgagaccgagagcgaagctggagat
ctgttagagcaacagtttgaggagctgaacaacaaactcacctctgccgccgaccccaca
ggctacctccgcatggtgtccaggaacaacctcttcaacaggagcagtcagagcatgacc
agcctttacagcgccacagtctctccagtcaaagacaacttatcgtctcctccttgtcga
ccgagtaacatcagcaaacctcctctacgagccctgtatgacttactcatagcaccgatg
gaagggggcctcatgcacagtagtggacccgtgggcagacacagacagctcgtattagtg
ttggagggagaattgtacctgatcccatttgccttgctcaaaggcagctcctctaatgag
tacctgtatgaaaggttcagtctcatctctgtgccttctttagccagcctgggagccaca
gtcaagcctccttctcgccgtgtcggtccctcactttgcacagatggaggttcagtggct
gcagtggttggagctcctcgcctgccctccagcgtgatggaccgctggttgtgggggcct
ttaccttcagcccaggatgaagctctgtggctgggggaacagcttggatgtcacccccta
actggagcgaatgccacgaaggagcgtgtactcgccgccctgagtcaggcagagtgcatt
cactttgcaacgcatatatcctggaagctcgccgctttggtcctcgcccccggcccagag
cacgctgggggagagggggcaggaagccgacccaaggagaaatcaccgtgtggggcgtcg
acctcaggcgaggctgtggaccaggatggaaaggtcaagggttcgttttcaaagagtcac
agcagcccagagagactcaggggagcagacgaaacgagcgaggacgcagaaagtgtgtgt
gaagtggagagtgtgtgtgacagcccgccgcttcaggacttcctcctcactgctgctgat
atactgggcctgtgtttgaccgtcaaagtggtggttctcaggttgtacccggagtccagc
agcagggtgtcagctgacggggtggtgggtctgacccgagccttcttggctgcaggcgtc
cagtgtgtgtgcgtctctctgtggcctgtgccgatagctgcctccaaactcttcacacac
accttctatacagccctcctcaacgggaccaaagccagcgctgctctgaccgaggccatg
aagacgctgcagagcagcaagcacttctcacacccctccaactgggccggttacatgttg
attggcaatgatgtgaagctgaacagtcccatgtcgctggttggccaagccctggcagag
atcctccagtacccagagagggccagggacgccctcagagtgctgctgcacctggttgaa
aagtctttgcagcgcattcagagcggccagtgtaacccaatgtacacgtcacaacaaagt
gtggagaataaggtcggcggggtgcccgggtggcaggccctcctgtctgcggtggggttc
cggttggacttctccggtagcggcgctggcctccccgcggcggttttcttccccacatca
gaccctggggaccggctgcagcagtgcagcaccactttacagtctctgcttggtctcact
cctccagctctgcaggctctgtgtaaactggtcacagcgtccgaggcaggagaacagctc
attcacaaggcggttaaaagcatggtgggaatgcttcaccaagtgttggtgcagttgcag
tcgggcgacaaagagcaggacttttcactggctcctattcaagtgtcgataagtgtgcag
ctctggaggcttccaggctgccacgagttcctggctgcactcgggttcgatctgtgtgag
gtgggtcaggaggaggtcgtgctgaagactggaaaacaggccagcagacgcaccatgcat
tttgccctccagtctcttctggcgctgttcgactccacagagcttcccaagcgactgagc
atggacagttcctcctccctggagtctctgtcgtcctcccagtccgcctcccagcctcac
tctttacccatctcctttggttgctacccacctcagccctccttcttgcccccagtctgc
cccgacaacctctcctgcgacgccatctccgtctacagcctcagctccctcgcctcctcc
ctcagtttcctgtcccgacctgagcccgcaggaagcgacatcatcagccagcgctcgcat
caacaggagccggacagatctcgcggcggagcgggcttgtacggctcgcaccggcattca
ggcggcggcctgctaagaggtcgactcaccaaccacggaggagcagcaggagaaggggag
gacgaggagtacgaggggtactccatcatcagcagtgagccgctgggacgaggggggagg
gactgtgacacgctgccgctacctgcaggtcacagacacggcagaggcggggccgggaga
ggagctaacgggggacatgggtatcctattacaatttcctccaaaggaagcgtcagcacg
ccgacatctcccattaaagctccaccactgcccctcacagtctcacccagccccaaactc
cggcaggaaatctcatctcctcagaggaccgggaaaggaaaggttagcagctctgagtcg
gaccagtccagcactgagacagacagcacggtcaagtcccaggaggagaggacgggtcct
gcgggacaaatggatccccaggaactggcccagaagatcctggaggagactcagagccac
atgcaagctgtggagagcctgcagaaagcaaacatcagagggaagacgctgaggggttct
gaggggagagaggaggcacaggcccggcagccgtctctctcgactcccacaaccccgact
ctgactccgtctggaggagcgcgtgggtttcagccctctgagaccagcgccttcagcaga
ccacccagcagagcgagtctaaaagcttgctcctctcctctgtccctctccagtcatctg
tcacccctctccgcctctgtttcaactcctcccccaacccgacctaaaccaccgtcccgc
tcctcttcgctacagaaaatcagctccggctacaacagtccggctcattcctctccttct
ttatctctgtctgtaaaagagcagggttcgcctttctccaccgcctccccggatgtgcac
gcacaggctgagctcaaactgaagtaccctacctcaccttacaccgcccacatctcacct
tcccgctctcctgccgacagcgccccatcgccggccctttcctactcctccacaggatcc
gtttcagcctcctccagccctgcaaacacccccgaactgaaccagtcaaagcaggataat
aaagtccaggcgattcataacttaaaaaccttctgggccaacgccagccagaaacacgag
gtgccctgccccgccagtttactccgaggtgggaataagaaaatgagtacagttcagaag
gatgtgttgggtttgttgaatctctcacccagacatgagtctctcagcaaaaacgtagaa
gcaccagaggatcagaagagcagcagcagaacaaatggtcaccaaaaactggaggctaaa
ccgcctccacctccacctcctaatgctcccacaaactctaaaggaggcatcaggcttccc
tctgggaacggctacaagttcctctctcctggacacttttttccgtcctctaaatgttga
DBGET
integrated database retrieval system
