Latimeria chalumnae (coelacanth): 102361535
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Entry
102361535 CDS
T02913
Symbol
DHX38
Name
(RefSeq) DEAH-box helicase 38
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102361535 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcm03041
]
102361535 (DHX38)
Enzymes [BR:
lcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102361535 (DHX38)
Spliceosome [BR:
lcm03041
]
Complex C
Other components
Step II factors
102361535 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
SRP54
Flavi_DEAD
AAA_16
Sigma54_activ_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
102361535
NCBI-ProteinID:
XP_014346344
Ensembl:
ENSLACG00000013007
LinkDB
All DBs
Position
Un
AA seq
1245 aa
AA seq
DB search
MEEEDASIHRLEGCDPQRQVGGLIVKKKSAAEEQHVFKAPAPRTSLLGLDLLAAQKRKER
EEKEEAEEHKKSKVSSYKDWEEGKDDSGSDDESGDKISRGTRKERNYRAVGVETPSHTGG
VSEEFKERNRQRERERREQGVYASSKDEKERKRDREKVRDRNRKRDKDDRDKSKYSSSRS
ERGERDRSQREGWSDRSSRERRRDEPESPRHRPKDALTPSRSSWDEDDSGYGSIRRSQWE
SPSPALSHKDSERSARSHRSSVRESERRDRDRSVRNRYSDDTPLPTPSYKYNEWADDRKH
LGSTPRLSRGKGRKEGEEDGIAFDTEEERQQWEEDQRQADRDWYMMDEGFDEFHNPLAYA
SEDYVKKREQHLQKQTQKRISAQKRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAA
KVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSLLVRKHREQKERKKA
QHKHWELAGTKLGDIMGIKKEEEEKDQAVGEDGNVDYRTEQKFANHMKDKSEASSEFAKK
KSIVEQRQYLPIFAIRQELLNIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTTYGMIGC
TQPRRVAAMSVAKRVSEEMGVNLGEEVGYAIRFEDCTSEGTVIKYMTDGILLRESLREAD
LDHYSAVIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFATFFGNVPIF
HIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGAPGDILIFMPGQEDIEVTSDQIIE
RLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVID
SGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNEMLTTT
VPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPT
GRLMVEFPLDPALSKMLIVSCDMGCSSETLIVVSMLSVPAIFYRPKGREEESDQIREKFA
VPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSIASC
GNDWDILRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIVYHEL
VMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEISAMEEEMALAEEQ
LRARKEEQEKKNLLNTGRSAKIYTPGRKEQGTPMTPRRTPARFGL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggatgcctccatccacaggctggaaggctgtgatccccagaggcaggtt
ggagggttgattgtcaaaaagaaaagtgcagctgaggagcagcacgtcttcaaggctccg
gccccgcggacctccctgcttgggttggatctactggctgcacaaaagaggaaagagcgg
gaagagaaagaggaggcagaggagcataagaaatccaaagtgtcttcgtataaggactgg
gaggaagggaaagatgactcagggtctgatgacgagagtggagacaagatcagcaggggc
accaggaaagagaggaattatcgtgctgtaggagtggagacgccgtcgcacactggtggt
gtcagtgaagaattcaaagagcgtaatcggcagagggagcgagagcgtagggaacaaggg
gtgtatgcgtcctccaaagatgagaaggaacgaaagagagaccgtgaaaaagtccgagac
cgtaacaggaaacgagacaaagatgaccgagacaagagcaagtacagtagcagcaggtct
gagaggggtgagcgggacaggtcgcagagggaaggctggtcagacagaagcagtcgggag
aggaggagggatgagcctgaatcccctcggcacagacctaaagatgctcttactccatct
cggtcgagctgggatgaggatgacagtggatatggcagcattcggcgttcccagtgggag
tctccatcccctgccctgtcacataaagactccgagcgtagtgcacgcagccatcgttcc
tctgtccgtgagagtgagaggcgggacagagacaggtctgtcagaaatcgatactcagat
gacacccctctgccaaccccttcctacaaatacaatgaatgggccgatgacagaaaacat
ttgggctcgacccccagactttcccgcggtaaaggaagaaaggaaggggaggaagatggc
attgcttttgacacagaggaggagaggcaacagtgggaggaagaccagaggcaagcggat
cgggattggtacatgatggatgaaggtttcgacgagtttcacaacccactggcatatgcc
tcggaggattatgtgaagaaacgggagcagcatctccagaagcagacgcagaaacgcatc
tccgcgcagaagaggcagatcaatgaggataacgagcgctgggagacgaaccgcatgctg
accagtggcgtagtccaccgcttggaagtggatgaagattttgaagaagacaatgccgca
aaggtccatctgctggttcataacctggtgccaccattcctagatgggaggatcgtcttt
accaaacaaccagagcctgtgattccagtaaaagatgcaacctctgacatggcgatcatc
tctcggaaaggaagtctgttggtgaggaagcacagggagcagaaagaacgtaagaaggcc
cagcacaagcactgggagctggctggtaccaaactgggtgacattatggggataaagaaa
gaggaagaggagaaggaccaagctgtgggtgaagacggcaatgtggattacaggacggag
cagaaatttgccaaccacatgaaagataagagcgaggcaagcagtgaattcgcaaagaag
aaatccattgtagagcagcggcaatatctgcccatctttgccatccgtcaggaattgctc
aacatcatacgggacaacagtattgttattgtggtaggtgagactgggagcgggaaaacc
acccaactgacccagtacctgcacgaagacggctacacgacctacgggatgattggctgc
acccagcccaggcgtgtggcagccatgtcagtcgccaagcgagtcagtgaggagatggga
gttaacctcggggaggaggtgggctatgccattcgctttgaagactgcacgtcagagggc
acggtgatcaagtacatgacggatggtattttgctgcgcgagtctctgagagaggcagac
ctggaccattacagtgctgtcatcatggacgaggctcacgagagatccctcaataccgat
gtgctctttggtctgctcagagaggttgtggctcgaagatctgacttgaagctgattgtg
acatcagccacaatggatgcagagaagtttgccacattttttgggaatgttccaattttc
cacattcctggaaggacttttcctgtggatatcttatttagtaagactccacaggaagac
tatgtggaagcagcagtcaaacaagctctgcagattcacctctctggggctcctggagat
atactgatattcatgcctggccaggaagacattgaggtgacgtctgaccagataattgag
cgtttggaagagttggagaatgcccctgctttggctgtgctacccatctactctcaacta
ccctctgacctgcaggccaagatctttcagaaggccccagatggagtgaggaaatgcatc
gtagctactaacattgcagagacgtccctgactgtagatggtatcatgtttgtgatcgac
tcgggctactgcaaacttaaggtgtttaaccccaggatcggtatggatgctctacagatc
taccccatcagtcaggctaatgccaatcagaggtcaggacgagctggaaggacaggacct
ggacagtgcttcagactgtacactcagagtgcatataagaatgaaatgctgaccaccaca
gttcctgagatccaacgcaccaacttagccaacgtggtgctgctgctgaagtcccttggg
gtccaggacctgctgcagttccacttcatggaccctccccctgaggacaacatgctcaac
tctatgtaccagctctggatcctgggagcccttgacaatacaggtgccttgaccccaaca
ggacggctgatggtggagttccctttggacccagctctatccaaaatgttgattgtgtcc
tgtgacatgggctgtagctcagagaccctcattgtcgtatccatgctctctgtacctgct
atattctaccggccaaagggcagggaagaggagagcgatcagatccgggaaaagtttgct
gtcccagaaagtgaccacctaacctacctaaatgtctacttgcagtggaagaacaacaac
tactccaccatctggtgtaatgatcactttattcatgctaaggccatgaggaaggtgagg
gaggtccgagcccagctaaaggacatcatggtccagcagcggatgagtattgcatcttgt
ggcaacgactgggacatccttcgcaaatgcatctgtgctgcttacttccaccaggccgca
aagctcaagggtattggcgagtacgtaaacgtaaggactgggatgccctgccacctccac
cccaccagctccctcttcgggatgggttacacacctgactatattgtttatcatgagctg
gtcatgactaccaaggagtacatgcagtgtgttactgcagtggatggagaatggctggcg
gagttgggtccaatgttctatagtatcaagcatgctgggaaatccagacaggaaaaccgt
cgccgggcgaaggaggagatctcagcaatggaagaggagatggcacttgcagaggagcag
ctccgagccaggaaggaggagcaagagaaaaagaacctgctgaacacgggacggtcagcc
aaaatttatactcctgggcgcaaggagcagggaacaccgatgacaccccgacgcacaccg
gcacgcttcggattgtag
DBGET
integrated database retrieval system