Larimichthys crocea (large yellow croaker): 104918956
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Entry
104918956 CDS
T04659
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
104918956 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104918956 (rabgef1)
Membrane trafficking [BR:
lco04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
104918956 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
104918956 (rabgef1)
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Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
Motif
Other DBs
NCBI-GeneID:
104918956
NCBI-ProteinID:
XP_010729150
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Position
XXII:19998816..20008251
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AA seq
513 aa
AA seq
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MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEAAYASSHGAQTQSHSQSTAPQSHPGHASLGPFSKFEEKKTNEKTRKVTTVKKFF
SPSSRTAPKKETQEGKTPSPSISRHASFDTDQVSKDFVDFLKNLQKPGREIHKQCRAFIV
AMSSKKDLSADELSECVQDFYQNMADRLLSHFKGSSDSVEQVMDQVEKYIMTRLYKSVFC
PETTDDEKKDLATQTRIRALHWVTIQMLCVSMDEEIPEVSENVVKAITDVIEMDSKRVPR
DKLGCITRCSKHIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPS
RLMTGEDGYYFTNLCCAAAFIEKLDAQSLNLSPEEFERYMSGQASPRLNSSEADWPQTGP
APGVTATNPVLAQLNHNLELLSGLSSRQEMLMEAAQSLQADLLSWPAGVQQEVNDILEKY
PLEILPRTVSAIDANNVDNDNLPPPLTPQVFAG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggacagagcgacggggtatacatgtagaccagtctgacctgctgtgtaaa
aagggatgtggttactatggcaacgctgcatggcaggggctctgctccaaatgctggagg
gaggagtatcagcgggtacgacagaaacagatccaggacgactgggccttggcagaaaag
ctgcagcgagaggaggaggcagcatatgccagcagtcatggagcacagacacagtctcat
tcccagtccacagcaccacagtcacacccaggccatgcttctctgggacccttctccaag
tttgaggagaagaagaccaatgagaagacacggaaagtgaccaccgttaagaagttcttc
agcccttcatcacgcactgctcccaagaaagaaacccaagaaggcaagacccccagtcca
tccattagccgccatgccagcttcgacacggaccaagtgtccaaggactttgtggacttc
ttgaaaaacctccaaaagcctggccgggagatccataagcagtgtagagccttcattgtg
gcaatgtcaagcaagaaggatctgagtgctgacgagctgtccgagtgtgttcaggatttc
taccagaacatggcggaccgtttgttaagtcactttaaaggctcttcagactctgtggag
caggtgatggaccaagtggagaagtacataatgactcgtctgtacaagagtgtgttctgt
ccagaaaccactgatgatgagaagaaggatttggccacacagacgcggataagagccttg
cactgggtgaccatccagatgctgtgtgtatccatggatgaagaaatccctgaagtctct
gagaatgtggtcaaagcaataacagatgtcattgagatggactcgaagagagttcctcgg
gacaaacttggatgcatcacacgctgcagcaaacacatcttcagtgccatcaggatcacc
aagaacgagccggcttcagctgacgacttcctcccagcgctcatttacatcgtgctcaag
gcgaaccctccacgacttcagtccaacatccagtacatcactcgcttctgtaaccccagc
aggctgatgaccggagaggatggatactacttcacgaacctgtgctgtgcagcggccttt
atcgagaagttggatgctcagtctctcaacctttccccagaggaatttgagcgctacatg
tcaggccaagcctcaccacgactcaacagctcagaagctgactggccccagactgggcca
gcacctggcgtgactgctaccaaccccgtcctggctcagctcaatcacaatctggagctt
ttgtcgggcctcagcagccgtcaggagatgctgatggaggctgctcagagtttgcaggcc
gacctcctctcctggcctgcgggtgtacagcaggaggtgaacgacatcctagagaaatac
ccgttagagattcttcctcgtacagtttctgcaattgatgccaacaacgtggacaatgac
aacctgccaccacccctaacaccacaggtgttcgctgggtag
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