Companilactobacillus crustorum: BI355_1082
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Entry
BI355_1082 CDS
T04712
Name
(GenBank) putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lct
Companilactobacillus crustorum
Pathway
lct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI355_1082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lct03019
]
BI355_1082
03400 DNA repair and recombination proteins [BR:
lct03400
]
BI355_1082
Enzymes [BR:
lct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BI355_1082
Messenger RNA biogenesis [BR:
lct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BI355_1082
DNA repair and recombination proteins [BR:
lct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BI355_1082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
APU71401
LinkDB
All DBs
Position
complement(1097677..1099467)
Genome browser
AA seq
596 aa
AA seq
DB search
MKLEATLKEEFGYDTFRPGQRELIEKVMAGQKAMGIMPTGGGKSICYQLPATILSGLTLV
VSPLISLMKDQVDSLNEVGIPATFLNSTVEWHDREERMRYIESGAVKLLFVAPEKIVDDE
FYSWLSALDISLIAIDEAHVLSSWGHDFRNSYLKMVEPLQQLPGKPAWLALTATATEQVQ
DDLAQILKIPADNIVKTGFDRDNIALKIERGVDKSEYVLNYVKAHIDESGIIYAGRREDV
DNIYEFLRANDVLVGRYHAGLSDQERHQQQEDFLFDRINVIVATNAFGMGINKTNVRYVV
HFTIPGTIESYYQEVGRAGRDGLPAEAVLLYAPADLRLHQFFIDHSQGDDQYKLSLKNKL
FEMSRYAETEVCLMKFILDYFGEKNSEICGRCSNCLDNREVEDVTADAQKVLSCVVRMNQ
RYGKKLIARVLVGKDDVADDWRHFEKLSTFGIFKDRTLKETSRLIEFLFANGLLRSSGGE
YPTLLLSKKGLAVLKGQLNVAKKKDEQQVPDRKPMVDDGSFDVDLFEKLRALRLSFARKQ
ALPPFMIFSDKTLKDMCVRIPTNSREFLAVSGVGKVKLEQYGESFINEIKEYQKAE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattagaagcaaccttgaaagaggaatttggttacgatacttttcgacctggtcaa
agagagttaattgagaaagttatggctgggcaaaaggctatgggaattatgcctacaggc
ggtggaaaatcaatttgctaccaattgccagcaacaattctttcaggattaactttggtc
gtttcaccattaatttctttgatgaaagatcaagttgacagtctgaatgaagtcggtata
ccagcaacttttttgaatagtacagttgagtggcatgatcgtgaagagcggatgcgctac
attgaaagcggagctgtaaaattattgtttgtggcaccagaaaaaatagtcgatgatgaa
ttctatagttggttatcggctttagatatttcattaattgcaattgatgaagcccatgtt
ttgtcatcgtggggacatgattttagaaacagctatctgaagatggttgaaccactgcaa
caattgccggggaaaccagcttggttagctttgactgctacagcaacggagcaggttcaa
gatgatttggcccaaattttaaaaattccagctgataatatcgtaaaaacaggctttgac
cgtgataatattgctcttaaaatcgaacgtggcgtagataagtctgaatatgttctgaac
tacgtaaaagctcatatagatgaatcaggaattatatatgctggaagacgtgaagatgtc
gacaatatttatgaatttttaagggctaatgatgtactagttggacgttatcatgcaggt
ttaagcgaccaggaacgacatcagcagcaagaagactttttgttcgatcgaatcaatgtg
attgtagcaacgaatgcttttggtatggggatcaataaaaccaatgtcagatatgtcgta
cattttacaattccaggaacaatcgaaagctattatcaagaggttgggcgtgccggacga
gatggattaccagctgaagctgtcttgctatatgcaccagctgatttacgattacatcaa
ttttttatcgatcattcacagggtgatgatcagtataaactcagtttaaaaaataagctt
tttgaaatgagtcgctatgccgaaactgaagtttgtttaatgaagttcatcctagattat
tttggagaaaaaaactcggaaatttgtggaagatgttccaactgtttggataaccgtgaa
gtagaagatgttacagctgatgctcagaaggttttaagctgtgtggtaagaatgaatcag
cgctatggtaaaaagcttattgcccgagtattagtgggtaaagacgacgttgctgatgat
tggcgacacttcgaaaaattatctacttttggtatctttaaggatcgaactcttaaagaa
actagccgtttgattgaatttttatttgcaaatggacttttacgcagtagtggtggcgag
tatccaacattattgttatcaaagaaaggactagcagttttaaagggacaactgaatgtt
gccaagaagaaagatgagcaacaagttcctgatcgtaagccaatggttgatgacgggagc
tttgatgttgatctctttgaaaagctaagagccttgcgtttaagttttgctaggaaacag
gcattaccaccatttatgatcttttccgataaaacattaaaagatatgtgtgtacgaata
cctactaatagtcgtgagttcctagctgttagtggagtaggaaaggtaaagcttgaacaa
tatggtgaaagttttattaatgaaataaaggaatatcaaaaagctgaatag
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