Lottia gigantea (owl limpet): LOTGIDRAFT_194209
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Entry
LOTGIDRAFT_194209 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K19719
collagen type II alpha
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
LOTGIDRAFT_194209
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lgi00536
]
LOTGIDRAFT_194209
Glycosaminoglycan binding proteins [BR:
lgi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
LOTGIDRAFT_194209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
RPOL_N
Motif
Other DBs
NCBI-GeneID:
20245069
NCBI-ProteinID:
XP_009061652
JGI:
194209
UniProt:
V4BFM7
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MGAEGRQGDPGRPGAQGPRGERGPSGEPGPGGPPGPTGQTGERGEGGQQGEQGFQGLPGA
DGAPGETGNTGPPGETGAPGESGLAGERGEQGFPGEVGPPGQRGAPGERGNSGPSGEVGM
PGPPGNSGDRGDPGPQGLIGLPGEQGPQGRAGPRGLTGSTGERGRDGEPGPPGETGNAGP
PGATGPSGLVAAKGDRGPSGPAGEPGPPGNTGQRGVAGAQGQQGPPGLGGAPGESGLAGE
TGAPGLKGDNGARGFRGEQGPSGEPGPEGVAGRKGSRGEGGTPGTAGQPGQPGRQGPAGP
PGAQGSLGPAGTAGQQGERGERGEVGPPGRQGEAGASGNNGLDGAPGDRGSPGQQGPSGP
PGPTGPQGERGNPGAPGFQGEPGPQGLAGAPGESGQAGRDGSDGQSGPPGPLGPPGSPGP
PGEPGLPGSSGKDGLPGLPGIVGSKGSRGLQGRSGPPGLQGNSGPPGTTGAQGSQGERGE
RGERGPSGQPGSTGAPGIAGAQGLQGEKGETGRSGAAGDKGWPGLPGPQGPPGPSGSSGE
TGPSGQQGPPGQPGQPGQRGLNGRPGEPGAQGQVGPAGGRGSQGDDGPSGPMGPRGAPGP
PGPPGYAPVFPPRQQQSKGVDPYYQYDQPEEDFLKLPNFNERVSLVQEALHRVRKPTGSK
LDPAITCRQLFEDNPEFEDGIYNIDPNMGSGIDSFEVFCRKQEGETCIKSAAAIYKPQRW
TQHDDGGYLFMEELNDDKEFEYAVKETQLNALKDHSEKGRQSLTYNCLNSEAYGLRFAMD
NDVEIDSTQTRIGKAATINYRDECNSTDNEWHSAVFELRTKKAKMLPILDVRLFDVGRDN
QQFGIEVGEVCFS
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgaaggacgacaaggtgatcctggacgaccaggtgcacaaggaccacgagga
gagagaggaccttctggtgaacctggtccaggcggacctcccggacccactggtcaaact
ggagaacgaggagagggtggacaacaaggagaacaaggtttccaaggtttacctggtgct
gatggagctcccggagagaccggtaacactggaccacccggagaaactggtgcccctggt
gaatctggacttgctggtgaacgaggtgaacaaggtttccctggtgaagttggaccacct
ggacaacgaggtgcccctggagaacgaggtaactctggaccttctggagaagtcggtatg
cccggtccacctggtaattctggagatcgtggtgatcctggtccacaaggattaattggt
cttcctggagagcaaggtccacaaggtcgtgctggtccaagaggtcttactggttctact
ggagaaagaggtcgagatggtgaacctggtccacccggagagactggtaatgctggtcca
cccggagcaactggtccatctggactcgtagctgctaaaggagatcgtggaccttccggt
cctgctggagaacccggtccacccggaaacactggacaacgaggtgttgctggtgcccaa
ggtcaacaaggtccacccggtcttggcggtgcccccggagaatctggtcttgctggtgaa
actggagctcctggattaaagggagataatggtgctcgtggattccgtggtgaacaaggt
ccctctggtgaacctggacccgaaggtgttgctggacgtaaaggttctcgaggagagggt
ggtacccccggtaccgctggacaacctggtcaacccggccgacaaggacccgctggacca
cccggagcccaaggatcacttggacctgccggtacagctggacaacaaggagaacgagga
gagcgaggtgaggttggacccccaggacgacaaggagaggctggtgcttctggaaacaat
ggacttgatggtgcccccggtgatagaggatctccaggacaacaaggaccatctggacct
cccggaccaactggaccacaaggtgaacgaggaaaccctggtgcccctggattccaagga
gaacctggacctcaaggtcttgctggagcacctggtgagtctggacaagctggacgagat
ggtagtgatggacaatctggaccacccggacctcttggtccacctggatctcctggacca
cctggagagcccggattacctggatcttctggtaaagatggtcttcctggattacctggt
attgttggttctaagggctcacgaggtcttcaaggacgatctggaccacccggactacaa
ggaaattccggtccaccaggaacaactggagcacaaggatctcaaggagaacgaggagag
cgaggcgaacgtggaccttctggacaacctggtagtactggtgctcctggtattgctgga
gctcaaggtcttcaaggagagaagggagaaaccggacgttctggagctgctggagacaaa
ggatggccaggattacctggtccacaaggacctcccggaccatctggaagcagtggtgaa
actggaccttctggtcaacaaggtcctcctggacaacctggacaacctggtcaacgtggt
ttgaatggacgacctggagagccaggagcccaaggtcaagttggaccagctggaggcaga
ggatctcaaggtgatgatggaccatctggaccaatgggaccacgaggtgcccctggacca
ccaggaccccccggatatgccccagtcttcccaccacgacaacaacagagcaagggagtc
gatccttactatcaatatgatcaaccagaagaagacttccttaaattaccaaacttcaac
gagagagtttcccttgttcaagaagcactccaccgagtacgtaaaccaactggcagcaaa
ttggaccctgcaattacttgccgtcaattattcgaagataacccagaatttgaagatggt
atttacaacatcgatcctaatatgggaagtggtattgattcatttgaagttttctgcaga
aagcaagaaggcgaaacctgtatcaaatctgctgccgccatctacaaaccacaaagatgg
actcaacatgatgatggtggatacttgtttatggaagaacttaatgacgacaaagaattc
gaatatgctgttaaagaaactcagcttaacgctttgaaggatcattcagaaaagggtcgt
caatcattaacatacaactgtttgaactctgaagcctatggattaagattcgccatggac
aatgatgttgaaatcgattccacccagactcgtataggaaaagctgcaactattaactat
agagatgaatgcaatagcacagataatgaatggcattctgccgtttttgaacttagaacc
aaaaaagctaaaatgttaccaatattagacgttaggttatttgacgtcggtcgtgataac
caacagtttggaattgaggtgggagaagtttgcttcagctaa
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