Latilactobacillus graminis: LG542_01000
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Entry
LG542_01000 CDS
T06857
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lgm
Latilactobacillus graminis
Pathway
lgm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LG542_01000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgm03021
]
LG542_01000 (rpoC)
03400 DNA repair and recombination proteins [BR:
lgm03400
]
LG542_01000 (rpoC)
Enzymes [BR:
lgm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LG542_01000 (rpoC)
Transcription machinery [BR:
lgm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LG542_01000 (rpoC)
DNA repair and recombination proteins [BR:
lgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LG542_01000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QFP78896
UniProt:
A0A5J6Z563
LinkDB
All DBs
Position
207860..211504
Genome browser
AA seq
1214 aa
AA seq
DB search
MIDVNKFESMQIGLASSDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDPGDTALEKKQLMTEREYREKLDEYGNRFNAKMGAEAIKELLR
DVDLEGEVAELKENLKSAQGQKRTRAIRRLDILDAFRKSGNNPEWMVMDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLMAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPTLKFYQCGLPRE
MALELFKPFVMHELVKREMASNIKNAKRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPILVDGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTLEQKGSLGEGMIFKDTNEVLMAYQTGHVHLHSRIGLS
IADMDNRPFPDEQRHKIMVTSVGKVMFNEIMPTGFPYLNEPTTDNLMNGVPDKYFIDNGE
DIHDYLSSAPVILPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYVQATHAGLTVGV
ADVPQLPEKQEIVDEAHKKVTTVSKQFRRGLITDEERHARVIEIWNDAKDDIQQRLTDAF
DPTNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVTSNFREGLSVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLLIHSIREGNELIEPLY
DRLVGRCAMKTVVNPTTGEVMVQRNQLMDEQLAQAVVDAGVEEVTIRSVFTCNTKHGVCK
KCYGRNMATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRIQEI
FEARNPKGLATITEVTGEVVAVEENPAEHTREITVQGETDTRSYSVPYTANVIVNEGDMV
RRGSKLTGGSVDPKQLIKVRDVLSTENYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKV
RVMDPGDTEILPGTLMDISEFTDRNHETLISGGVPATCRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKSDPLLGLKENVIIGKIVPAGTGMAKYRHMEPKTVGAVSENVYSI
SDIEAQMKEAETKE
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtcaataaatttgaaagtatgcaaattggtttagcatcttcagataaaatt
cgtagttggtcgtatggtgaagttaaaaagccggagacaatcaactaccgtactttaaaa
cctgaacgtgatggcctttttgatgaacgaatcttcggacccacaaaagattgggaatgt
gcttgcggtaagtataaacgaattcgttataagggaattgtctgtgatcgttgtggcgtg
gaagttacacggtcaaaagtgcgtcgtgaacgcatgggacatatcgaacttgcagcgcca
gtaacccatatctggtattttaagggaattcctagccgcatgggacttgtcttagacatg
agcccacgtgctttggaagaaattatttacttcgcatcatacgttgtgattgatccaggg
gataccgcccttgagaaaaaacaattgatgaccgaacgtgaataccgtgaaaaattagat
gaatatggtaatcgtttcaacgctaagatgggcgctgaagcgatcaaagaattgttacgt
gatgtcgatcttgaaggcgaagttgctgaattaaaagaaaatttgaagtcggcacaaggc
caaaagagaacccgcgcaattcggcgtttagatattttagatgccttccgtaaatcgggg
aataaccctgaatggatggttatggatgcgattcccgtgattccaccagatttacggcca
atggttcaattagaaggtggccgatttgccacttctgatctaaatgatttgtaccgtcgg
gtaatcaaccgcaacaaccgtttgaaacgattattggatttgatggcaccaagtattatc
gttcaaaatgaaaagcgaatgttacaagaagccgtcgatgctttgattgataatggtcgt
cgtggtcgtccagttactgggcctggtaaccgcccattgaagtctctttcgcatatgttg
aaaggaaagcaaggccgcttccggcaaaacttacttggtaagcgtgttgattattctggc
cgttccgttatcgatgttggcccaacattgaagttctatcaatgtggcttacctcgtgaa
atggcccttgaattgttcaaaccattcgtgatgcatgaattagtgaaacgcgagatggct
tcaaacatcaaaaatgctaaacgtaaaattgatcggcaagatgatgatgtttgggatgtt
ttagaagatgtcatcaaggaacgcccagttctattgaaccgtgcacctactttgcatcga
cttggaattcaagcatttgaaccaatcttggttgatggtaaatcaattcgtctccatccg
ctagcttgtgaagcttataatgccgattttgatggggatcaaatggcaattcatgtacct
ttatctgatgaagcacaagcagaagcaagaatgttaatgcttgctgcacatcatattttg
gcaccgaaagatggtaagccaattgttactccttctcaagatgttgttttaggaaactat
tacttaacacttgaacaaaaagggagtcttggcgaaggcatgatcttcaaagatacaaac
gaagtcttaatggcttatcaaaccggtcatgtgcatttacacagtcggattggattatca
attgcagatatggacaatcgcccattccctgacgaacaacgtcacaagattatggtaacg
agtgttggtaaggtgatgttcaacgaaatcatgccaactggcttcccatatttgaatgaa
ccgacaaccgataacttgatgaacggtgtgccagacaaatactttatcgacaacggtgaa
gatattcatgactacctctcaagtgccccagtgatcttaccatttaagaaaggcttctta
agtgatatcatcgcgcaagtcttcaaggtatataaggttcaacggacatctgacttattg
gatgatatgaagaccttaggttacgttcaagcgacccatgctggtttaacagttggggtt
gcagacgtgccacaattacctgaaaaacaagagattgttgatgaagcccataagaaggtt
acgacggtttctaaacaattccgacgtggtctgattacagatgaagaacgccatgcacga
gttatcgaaatctggaacgatgctaaagatgatattcaacaacgactcacagatgcgttt
gatccaaccaacccaatttcaatgatgtctgattctggtgctcgtgggaacatttctaac
tttacccaacttgccgggatgcgtggattgatggctgctccaaatggtgggatgatggaa
gttccagttacatcaaacttccgtgaaggcctttctgttatggaaatgttcatgtcaact
catggtgcccgtaaagggatgactgatacggcacttaagacagccgattctgggtactta
acgcggcgtttggtggatgttgctcaagacgttattattcgtgaagaagattgtgggaca
gatcgtggtcttttaatccattcaattcgcgaaggtaatgaattaattgaaccgttatat
gatcgtcttgttgggcggtgtgcaatgaagaccgttgttaatccaacgacaggtgaagtg
atggttcaacggaatcaattaatggatgaacagcttgctcaagcagttgttgatgctggt
gtcgaggaagttactattcgctccgtcttcacatgtaacacaaaacatggtgtctgcaag
aaatgttacggtcgtaacatggctactggtgaagaagttgaagttggagaagcagtcgga
actgtcgcggcacaatcaatcggtgaacctggtacgcaattaaccatgcgtaacttccat
accggtggggttgccggcggtgaagatatcacacaaggtttacctcggatccaagaaatt
tttgaagcgcgtaatcctaaaggtcttgcaaccatcactgaagtaactggtgaagttgtt
gcggtggaagaaaaccctgccgaacatacgcgtgagatcactgttcaaggtgaaacagat
acacgttcatatagtgtgccttacacagccaacgtcatcgtcaacgaaggtgatatggtt
cgtcgcggttctaagttaacgggtggttctgtcgatcctaaacaattaattaaagtacgt
gacgttttatcaacagaaaattatctcttgcatgaagttcaaaaggtttaccgcatgcaa
ggggttgaaattggcgataaacacgttgaagttatggttcgtcaaatgttgcgtaaagtt
cgagttatggatccaggtgatacagaaatcttacctggtacattaatggatattagcgaa
tttacggatcgtaaccacgaaacattaattagcggtggggtgccagctacatgtcgtcct
gtcttgcttgggattactaaagcatcattggaaacaaatagtttcttatcagccgcatca
ttccaagaaacaacgcgggtcttaacggatgcatcaattcgtggtaagagtgatccatta
cttggtttgaaagaaaatgtaatcatcggtaagattgtcccagctggtactggtatggcg
aaatatcgtcatatggaacctaagacagtcggtgctgtatcggagaatgtttactcaatc
agtgatattgaagcgcagatgaaagaagcagaaacaaaagaatag
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integrated database retrieval system
