Lactococcus garvieae Lg2: LCGL_0232
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Entry
LCGL_0232 CDS
T01963
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lgv
Lactococcus garvieae Lg2
Pathway
lgv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lgv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCGL_0232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgv03400
]
LCGL_0232
Enzymes [BR:
lgv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LCGL_0232
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LCGL_0232
DNA repair and recombination proteins [BR:
lgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LCGL_0232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
BAK59692
UniProt:
F9VBJ1
LinkDB
All DBs
Position
236969..237790
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AA seq
273 aa
AA seq
DB search
MPELPEVENVRRGLEKLVRNKKILEIESSYPRMVLTGFEALKKELEGQVIKDIQRRGKYL
LFDFGQWTLISHLRMEGKYRVEPLDFVKQKHDHVFVKFSDATLIYADVRKFGTWELLKSQ
DVERYFISKKIGPEPSFETFDEGIFAEKLKKSKKKIKPYLLDQTLVAGLGNIYVDEVLWR
SQVHPEMLASALSESQIHRIHDYTIEVLQTAVERGGSSIRTYKNAMGEEGSMQELLMVYG
KQGQLCPNCQHVVIEKIKVAGRGSHFCPYCQKV
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttaccagaagtcgaaaatgtacgccgaggcttggaaaagctggtgagaaat
aaaaaaatattggagattgaaagttcttatccacgaatggttttaacaggattcgaggcg
ctaaaaaaagaacttgaaggtcaagtcatcaaagatatccagcgccgtgggaagtacttg
ctttttgattttggccagtggaccttgatttcccatttacgtatggaggggaaatatcgg
gtggaacccctggactttgtaaaacaaaagcatgatcatgtctttgtcaagttttcagat
gcgacacttatttatgcagatgtccgcaagtttgggacttgggaattattgaaaagtcag
gatgttgaacgttatttcatttcgaaaaagattggcccagagcccagctttgaaaccttt
gatgaggggatttttgctgaaaaactaaagaaatcgaaaaaaaagataaaaccttatctt
ttagatcagactttagttgctgggctaggaaacatctatgttgatgaggtactttggcga
tcacaagtgcatcctgaaatgttggcttcagccttgagtgaatctcaaattcaccgcatt
catgattatacgattgaagtcctccaaacggcagttgaacggggaggttctagtatacgg
acttataaaaatgcgatgggtgaggaaggaagtatgcaggaattgctcatggtttatggc
aagcaagggcaactttgtcccaattgccagcacgtggtgattgaaaagataaaggtcgca
ggacgcggctcacatttttgtccatattgtcaaaaagtatag
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