Linepithema humile (Argentine ant): 105675342
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Entry
105675342 CDS
T04898
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105675342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105675342
Enzymes [BR:
lhu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105675342
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105675342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105675342
NCBI-ProteinID:
XP_012227812
LinkDB
All DBs
Position
Unknown
AA seq
544 aa
AA seq
DB search
MTEVTNLNFNKIYPHLERVLRNANFIAIDTELTGIEDNENKNSLFDSTEERYEKQRSNIQ
SYIIIQFGISAFQRVPNKNEYTAEAFNFFLLPRSIPSKNRRFVWQVAALEFLATYGFDFN
KFAYKGISYLNEVEHEILQKQLQENVLFRNVERSVSYKEEDDLKDYINQVAEWLSTADDA
SSLKITTSTPILQYLTHKELRNRFSNVWTISGNNMVTVMKIPPESREMFEQEEKDYILEN
ILLESYIGFSKVFKLLVALKKPIIAHNALLDFMFMYQQFYKPLPQKYINFKNNIHELFPT
IYDTKFLSFELRELLQTEERWKSNSLSGLVAYFTEKQQRNIILGSPAIKLISHIDSKKSS
VIVPAAKYHTAGWDAYFAGYVFIKIAHIFAKKNYTECSTLQHFTHTELMSGVKRFSNCVN
IIRGNASHLKFDGPEPKSTRPQWLYVKTLASKPITALQIAEKMSTFGNVDVKQCTSKRVL
VAVANHGSARDIIQHFKQNKELYVVPYNPIRHSPSVQFFLWGSIVLSSGFFAWMLHQKLQ
KGTS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagtcacgaatctgaatttcaacaaaatatatccacacttggagcgtgtgtta
agaaatgccaatttcatagcaattgatacagaactgacaggtatagaagataatgaaaac
aaaaatagtttgttcgattccacagaggaacgctatgagaaacaaagaagcaatattcag
tcgtatataataatacagtttggtatctctgcgtttcaacgagtaccgaataaaaatgaa
tacactgcggaggcctttaatttctttctgctgcctagatctattccatcaaagaataga
cgatttgtttggcaggttgcagcactagaatttctggctacatatggatttgatttcaac
aaatttgcttataaaggaatttcatatctcaatgaggttgagcatgaaattttacaaaaa
caactacaggagaatgtattatttcgcaatgtggaaagatctgtttcctataaagaagaa
gatgatcttaaagattatatcaatcaagtagctgaatggttgagcacagctgatgatgca
agttcacttaaaattaccacttctactccaattctgcagtatcttacgcacaaagaattg
agaaatcgtttctcaaatgtttggactatttcaggaaataatatggtcactgtgatgaaa
ataccaccagaatcgagagaaatgtttgaacaagaagaaaaagattacatactggaaaat
attttactcgaatcatatataggtttttcaaaagtattcaagctcttggtcgctttaaaa
aaacctataatagcgcataatgctttgttagattttatgtttatgtatcaacaattttac
aagccattaccacaaaagtatattaatttcaagaataatatacatgaattgtttccaaca
atttacgataccaaatttttaagctttgaactgagagaacttcttcaaactgaagaaagg
tggaaatctaattctttaagcggtttagtcgcctattttacagaaaagcaacaaagaaat
attatattaggatcacctgctattaaactcatctctcatatagattcaaaaaaatcaagt
gtgattgtacctgctgcaaaatatcatactgcaggttgggatgcctattttgccggttat
gtatttatcaaaatagctcatatatttgctaaaaagaattatacagaatgttcaacattg
caacatttcacacatacagaattaatgagcggtgtgaaaagattttcaaactgtgtaaat
atcattcgcggcaatgcgtcacatttgaaatttgatggacctgaacctaaatccactcga
ccgcagtggctttatgtgaaaacgttagcttcgaaaccaatcactgctttgcagatagct
gaaaaaatgtcgacattcggcaacgttgacgtgaagcagtgcacatcaaagcgcgtatta
gtcgcagttgcaaatcacgggagcgcacgagacataatacaacacttcaaacaaaacaag
gagctatatgtagtgccttataatccgatacggcactcaccttcagttcaattcttttta
tggggcagcatagttctttctagcggattttttgcatggatgctgcatcagaaacttcaa
aaagggacctcttag
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