Lawsonia intracellularis PHE/MN1-00: LI0904
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Entry
LI0904 CDS
T00354
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lip
Lawsonia intracellularis PHE/MN1-00
Pathway
lip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LI0904 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lip03021
]
LI0904 (rpoB)
03400 DNA repair and recombination proteins [BR:
lip03400
]
LI0904 (rpoB)
Enzymes [BR:
lip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LI0904 (rpoB)
Transcription machinery [BR:
lip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LI0904 (rpoB)
DNA repair and recombination proteins [BR:
lip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LI0904 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAJ54958
UniProt:
Q1MPW9
LinkDB
All DBs
Position
complement(1123545..1127711)
Genome browser
AA seq
1388 aa
AA seq
DB search
MSLDELFTVRSTATANATQIRNLKAIQISIASPENIREWSYGEVKKPETINYRTFKPERD
GLFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHI
WFLKTLPSKIGTLLDMAMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIEHINE
ESFVVGMGAEAIRGLLEELNLETLRNSLREESQSTKSQTKKKKLTKRLKVVEAFIESGNR
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPEIIIR
NEKRMLQEAVDALFDNGRRGRAIAGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGHASTIKSAKKIVEREELVVWDILS
DVVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCAAYNADFDGDQMAVHIPLS
VEAQVECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVERSFEKGEGMVFCAPWEV
ISAIDNNQVNIHAKIKVRMEDGNIYNTTAGRILVWEGLPKGLKFEYVNCVLTKKNIATLV
GNAYRDAGIKATVILCDRLKDIGYEYATRAGITIGVKDLIIPATKKTIIDTATSEVDDIE
RQYRDGIITRTEKYNKVVDVWTKATQDISSEMTKEISTEVVKDPKTERTEVNQSFNPIFM
MSNSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSNFREGLTVLQYFTSTHGARKGLA
DTALKTANSGYLTRRLVDVVQDVIVYKNDCGTVDGIEVKQVQDGGEIKQNLSERILGRVL
LYPIYHPVTNEIIFPENTLIDEYVVKKLEEIGIASVTIRSALTCQSERGVCALCYGRDLA
RGHLVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSNFEALHSGRIVLTRVK
SVENRDGVHLVIGKSGQLSIVDEQGRERERYSLPNGARLYVKEGQEVTKGTFLAEWDPFN
EPFVSEVNGFIKFTDLIDGKTYQEKLDEATHQSSMTIIEYRTTSFRPSISICDAEGQTKQ
RITSTTPAIYSLPAGAIIMVKDGQEVQAGDIIARKPRETSKTRDIVGGLPRVAELFEVRK
PKDMAVVSEIAGIVTYAGESKGKRKLIVTPEIGDPKEYLIPKGKHINVSDGDFVEAGDLL
TEGHPELHDILKTRGEKYLAAYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLRKITVTNPG
GTTFLVGEQVDKGDFKEENQKIVEEGLEPATAEPLVLGITQASLTTSSFISAASFQETTK
VLTEASLKGKMDYLRGLKENVIVGRLIPAGTGYREYMELDIVVPEQKERPNKFLEELEER
PVLIEIDS
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgatgaactttttactgttcgtagtacagcaactgcaaatgctacacaaatt
cgtaatcttaaagctattcaaatttctattgcttctcctgagaatattagagaatggtca
tatggtgaagttaaaaaaccagagactattaattatcgtacatttaaaccagaacgcgat
ggtttattttgtgctaaaatttttggacctgttaaagattacgaatgcaactgtggtaaa
tataaaagaatgaaacaccgtggtattgtctgtgaaaaatgcggtgttgaagttattgct
tctaaagtaaggcgtgagcgaatgggtcacatagaacttgcagctccagttgcacatata
tggtttctcaaaactctaccatctaaaattggtacccttcttgatatggctatggcagat
cttgaaaaagttttatattttgactcatatattgtacttgatccaggctctactaactta
acaaaaatgcaagttatttctgaagatcaatacttacaagtcatagagcatattaatgaa
gaatcttttgttgtaggaatgggtgctgaagctatacgtggacttttagaagaattaaat
cttgaaacactgcgtaactccctacgtgaagaatctcagtcaactaaatcacaaacaaaa
aagaaaaaacttaccaaacgtcttaaagttgtagaagcctttattgagtccggaaaccga
cctgaatggatgattatggaggttatacctgttattccaccagaattacgtccccttgtt
cctcttgatggaggacgttttgcaacatctgacttaaacgatctatatcgtagagttatt
aatagaaataatcgtttaaaacgacttatggagcttggtgctccagaaattattattcgt
aatgaaaaacgaatgcttcaagaagccgttgacgctctttttgataacggacgtcgtgga
cgtgctattgcaggcacaaatggtcgacctttaaaatcactctctgacatgattaaagga
aaacaaggtcgattccgtcaaaacttacttggtaaacgagtagattattctggacgttca
gtcattgttgtaggtcccaagttaaaactacatcaatgtggattacctaaaaaaatggca
ctagaactgtttaaaccttttatttactctgaacttgaaaaaagagggcatgcatctact
atcaaaagtgccaaaaaaattgttgaacgtgaagaacttgttgtatgggatatcctttct
gatgttgttcgtgaatacccaatactacttaatcgtgcccctacccttcacaggctagga
attcaagcctttgaacctctccttgttgaaggaaaagcaattcaactccatcctcttgtt
tgtgcagcatataatgcagactttgatggcgaccaaatggctgtacatatacctttatca
gtagaagcacaggtagagtgtcgtgtgcttatgatgagtacaaacaatattctctctcct
gcaaatggctcacctgttattgtaccatcacaagatattgttctaggtctttattatatg
actgtagaacgctcttttgaaaaaggtgaaggaatggttttctgtgccccatgggaagtt
atttcagctattgataataaccaagtcaacatccatgcaaaaattaaagtccgcatggaa
gatgggaatatatataatactacagcaggacgtattcttgtttgggaaggtctgcccaaa
gggcttaaattcgaatacgttaattgtgttcttactaaaaaaaatattgctactcttgtt
ggaaatgcttatcgtgatgctggaatcaaagcaactgttattctctgtgaccgcctaaaa
gacattggatatgaatatgctacaagagcaggcatcacaattggtgtgaaagatctcatt
attcctgctaccaaaaaaacaatcattgatacagctacttctgaagttgacgatattgaa
cgtcaataccgtgatggtattatcacccgtacagaaaaatataataaagttgttgacgtt
tggactaaagctacacaagatatttcttcagaaatgaccaaagaaatttctacagaagtt
gttaaagatccaaagacagaaagaacagaagtcaaccaaagctttaatcctatttttatg
atgtccaactctggtgctcgaggaaaccaggatcaaatgcgacagttagcaggaatgcgt
gggttaatggctaaaccttcaggtgaaattattgaaacaccaatcacttctaacttccgt
gaaggattaacggtactccaatattttacatctacacatggtgcccgaaaaggtcttgca
gacactgctctaaaaactgctaactctggatatcttactcgtcgtcttgtagatgttgtc
caagatgttattgtttataaaaatgactgtgggactgtagatggtattgaagttaaacaa
gttcaagatggtggagaaatcaaacaaaaccttagtgaaagaattctaggccgagttctt
ctctatcctatctatcatcctgttactaatgaaatcatcttccctgaaaatactcttata
gacgaatatgttgttaaaaaacttgaagaaattggtattgcttctgtcactattagatct
gcattaacttgtcagtctgaacgtggggtatgtgcattatgttatggacgtgatcttgct
cgtggccatcttgtcaacataggtgaaactgttggtataattgcagctcaatctattggt
gaacctgggacacaacttaccatgcgtactttccatattggtggaactgcctcacgcgaa
attgaacgctctaattttgaagctcttcattctggaagaattgttcttactcgtgttaag
tcagttgaaaatcgtgatggcgtccatcttgtaataggtaaaagtggtcaactttctatc
gtagatgaacaaggacgagaaagagaaagatattctttacctaatggagctagactttat
gtaaaagaaggacaagaagtcacaaaaggtacttttcttgcagaatgggatccttttaac
gaaccttttgtctctgaagtaaatggatttatcaaatttaccgatcttattgatgggaaa
acataccaagaaaaacttgatgaagctactcatcaatcatccatgacaataattgaatac
agaactactagcttccgtccttcaatatcaatatgtgatgcagaaggccaaacaaaacaa
cgtatcacaagtacaacacctgcaatatatagtctccctgcaggagctattataatggtc
aaagatggtcaagaagtacaagctggggacattatagctcgtaaacctcgtgaaacttca
aaaacacgtgatattgttggcgggcttcctcgagttgctgaattgtttgaagtccgtaaa
ccaaaagatatggctgttgtttccgaaattgcaggtatagttacttatgcaggtgaatcc
aaaggaaaacgtaaacttattgttactcctgaaataggtgatcctaaagaatatcttatt
ccaaaaggtaaacacattaacgtttctgatggtgactttgttgaagcaggagatctctta
acagaaggacatcctgaacttcatgatatccttaaaacaagaggtgaaaagtatcttgct
gcatatcttgttgatgaaattcaagaagtttaccgctttcaaggtgtaggaattgacgat
aaacatattgaagtcattgttcgacaaatgttacgtaaaatcactgtaacaaatcctgga
ggaacaacgttccttgttggagaacaagtagataaaggtgactttaaagaagaaaaccaa
aaaattgtggaagaaggattagaacccgctacagcagaaccattggtattaggaattact
caagcctcactaacaacttcatcatttatttcagcagcttcattccaagaaacgacaaaa
gttcttacagaagcttctctaaaaggaaaaatggattacctgagaggactaaaagaaaac
gttattgttggtcgacttattcctgcagggacaggttatagggaatatatggagttagat
attgttgttcctgaacaaaaagaacgtccaaacaaatttcttgaagaacttgaagaacgt
cctgttttaatagagatagattcttag
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