Lawsonia intracellularis N343: LAW_00471
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Entry
LAW_00471 CDS
T02437
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lir
Lawsonia intracellularis N343
Pathway
lir02020
Two-component system
lir02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lir00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LAW_00471 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LAW_00471 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lir03021
]
LAW_00471 (rpoN)
Transcription machinery [BR:
lir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LAW_00471 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AGC49871
LinkDB
All DBs
Position
552086..553507
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AA seq
473 aa
AA seq
DB search
MGLELKQQLKLSQQLVMTPQLQQAIRLLQLSRVELAETIQKELLENPFLEESQEEIASER
QETRTEHDPSEAYDQDVSNTADWEDYLGEFASTPKQLQSREYELSEEMSSLEARYASRPT
LESHLMWQLRLSTLTDEQKNLGEAIIGNLSSSGYLQASLEEIANSEHTDIEKLKPVLHAI
QRFDPVGVAAQSPQECLLIQIEVLGYDRDPILVELIQNHLDDLEAHRYKPLLRKLHITME
ELKEYIDIIQTLDPLPGASYGEGDPTYVSPDAFVYQVDNEFIILLNDEGLPNLHLNQAYE
HILEESSDKDKEYFSEKIRSAAWLIKSLHQRQRTLYKVVESIVKYQQTFFKEGITKLRPL
ILKDIADDIGMHESTVSRITTNKYIATPFGIFELKFFFNSALGVDDGSQVGSESVKAIIK
KCINEEDPKNPLSDERIGEILKEQLKVNIARRTVAKYRMSMDIPSSSRRKVHF
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggactagaactcaagcaacagcttaaacttagtcaacagcttgtaatgactccccag
ttgcagcaggcgatccgtctattgcaactatcacgggttgaattagctgaaacaattcaa
aaagaattgttagaaaatccatttctggaagaatcgcaggaagaaatagcttctgaacgt
caagaaacacggacagaacatgatccttctgaagcctacgatcaggatgtatccaacact
gcagactgggaagattatcttggtgaatttgcaagcacaccaaaacaacttcaatctcgt
gaatacgaactttctgaagagatgtcttctcttgaagcaagatatgcctctcgcccaaca
cttgaaagtcaccttatgtggcaacttcgcctttcaacgcttactgatgaacaaaaaaat
ttaggtgaagctattataggaaacctatcttcatcaggctaccttcaggcttcacttgaa
gaaatagcaaatagcgagcacacagatatagaaaaacttaaacctgttctccatgcaata
caaagatttgatcctgtgggggtagcagctcaatctcctcaagaatgcctacttatacaa
atagaagtcttaggctatgatagagatcctatcttggtagaacttatacaaaaccatctt
gatgatcttgaagcacaccgatataaacctcttctacgtaaactccacattactatggag
gaacttaaagaatatattgatataattcaaacacttgatcctctacctggagcaagttat
ggagagggagatcctacttatgtgagccctgatgcatttgtctatcaagttgataatgag
ttcattatattacttaatgatgaaggattacctaatcttcatctaaaccaagcttatgaa
catattttagaagaatcaagtgacaaagataaagagtatttttcagaaaaaattcgttca
gctgcatggctaatcaaaagcttgcaccaacgacaaagaacactatataaagtagtagaa
agtattgtaaaatatcaacaaaccttttttaaagaaggtatcacaaagcttcgtcctctt
atattaaaagatattgctgatgatattggtatgcatgaatctacagttagccgaataact
actaataaatacattgcaacaccatttggaatttttgaattaaaatttttctttaatagt
gcacttggtgttgatgatggtagtcaagttggctctgaaagtgtaaaagctattataaaa
aaatgtatcaatgaagaagatcctaaaaatcctctttctgatgaacgaattggtgaaatc
ttgaaagaacaattaaaagttaatattgctagacgaacagttgcaaagtatcgtatgtct
atggatattccatcttcatcacgtagaaaagtacatttctaa
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