Listeria ivanovii subsp. ivanovii PAM 55: LIV_1481
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Entry
LIV_1481 CDS
T01623
Name
(GenBank) Putative single-stranded-DNA-specific exonuclease (RecJ)
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03410
Base excision repair
liv03430
Mismatch repair
liv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LIV_1481
03430 Mismatch repair
LIV_1481
03440 Homologous recombination
LIV_1481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liv03400
]
LIV_1481
DNA repair and recombination proteins [BR:
liv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LIV_1481
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LIV_1481
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LIV_1481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CBW85964
UniProt:
G2Z9M4
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Position
complement(1546714..1549065)
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AA seq
783 aa
AA seq
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MIDSKYLWNIEEAEEEKATQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYQTYDP
FLFAEMDLAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLQHLGANAEFYIPNRFT
EGYGPNIAAFDLAKNQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV
AVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPTELLDLVAVGTVADLVSLTDENRML
VQLGLRQLREGANIGLAILAKKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLL
TEDPEEALFLAEEIDDANKERKQMVVDTTKLAMEAIEAKNSLGKVLVVSGEGWNTGILGI
VASKLVSVYSRPAIVLGIDAATGIAKGSGRSIESFHLYQALDKHRELMTAFGGHPMAAGL
TLPAENLLELEAKLQEEASQLVEEDFRPALQIEERINLADASVAFIAQLEKLAPFGMDNP
KPIFLLEGMKLKGTKRIGADKTHLKTMLGTGGTDTTLDAIGFGVGDLVEKISPSADVDVV
GELSINEWNNIKKPQLRMMDVRIAHWQLFDVRSKTEWSRIRQEKADSRIYICFEERTAKT
LGEQNHFLVDEKADFKVDIQTEELVFADIPPNLKLIEEIVREVKPARIFVHFDAAEGNQI
PAIPDRKAFAELYSLIKKFQPFPIEKYTPRLMQKFGWNKEQIEFMSNVFFDLEFAKMESG
QIIVNQVVGKRNLDESLVYQQKVEEITTRKKLLYSNYSELHSWMKSMMETSIYPNAEELE
NGN
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
gtgattgattcaaaatatttatggaatatcgaggaagccgaagaagagaaagcaactcaa
ttagcagaacaactgaaaatctcgcttccacttgcaaagctactttggaaaagaaagatt
acaacgcaaggacaattcgataaatttttccacccagaaaaatatcaaacttatgaccca
tttctatttgcggaaatggatcttgcggttgcgaggattaaacaagcaatcgaactaaat
gaacaaatccttgtgtacggagactatgatgcagatggtgttacgagtattgctgtgtta
atgaagacattgcagcatttgggagctaatgcagaattttatatcccaaatcgctttaca
gaaggttacggacctaatattgccgcttttgatttggcgaagaaccaaggcgttgattta
ataattaccgttgataatggtattgctgcgctagaagttatgacacatgccaaagaaatt
ggtttagatgttatcgtaacggaccatcatgaaccacgggaagttatgccagaagcagtc
gctgttattcatccgaagcatccaaaatctgcttatccatttgatgaactcgctggggtt
ggagttgcttataaattatctcatgcactacttggcgaggaaccaacagaattattagat
ttggttgcagtcgggacggttgctgatttagtgtcactaactgacgaaaatcgtatgctg
gtccaattaggtttgcgtcaactacgcgaaggggcaaatattggtttagctattttagca
aaaaaagctagtttgaagttggaagaagctacggaagaaacgattggatttggtcttgct
cctagacttaatgcagttggccgtcttggccctgcggatccagcagcagatctgctttta
acagaagatccagaagaagcactttttttagcagaagagattgatgacgctaataaagaa
cgcaaacaaatggttgttgatacgactaaacttgcgatggaagcaattgaagcaaagaac
agtctggggaaagtgttagttgttagtggagaaggatggaatacagggattctgggcatt
gtggcctcaaaactagttagtgtgtattctagaccggccattgtactaggtatagacgca
gcaacaggaatagctaaaggttcaggtcgtagcatagagtctttccatttgtatcaagca
cttgataaacatcgagaattaatgactgcatttggtggtcatcccatggctgctggtctt
actttgccagcagaaaatttgctggaattagaagctaagttacaagaggaagcgagccaa
cttgtagaagaagattttcgtccagccttgcaaatagaggaacgtattaatctagcagat
gcctcggtagcttttatcgctcaactagaaaaactagcaccgtttggaatggacaatcca
aagccaattttccttttagaaggaatgaagttaaaagggacgaaaagaattggcgccgac
aaaacacatctaaaaacaatgcttgggacaggtggaacggatacaacacttgatgccatt
ggctttggcgtaggcgatctagtcgagaaaatttctccttcagcagatgtagatgtcgtt
ggtgaattatctatcaatgaatggaacaatattaaaaagccacaacttagaatgatggat
gttcgtattgcacactggcaacttttcgatgtgcgaagtaaaacggagtggtcgcgaatt
cgtcaagaaaaagcggattcacgcatatatatttgttttgaagagcgaacagctaaaaca
ctcggagaacaaaaccattttttagtagatgagaaggcagatttcaaagtagatatccaa
acagaggagctcgtatttgcggatattccaccgaatctaaagctgattgaagaaattgtc
cgcgaagtaaaaccagcgcgtatctttgttcattttgatgcagcagaaggaaatcaaatt
ccagcaataccagatcgtaaggcatttgctgagctatatagcttaataaaaaaattccaa
ccatttccaattgaaaaatacacaccacgcttaatgcaaaagtttggttggaataaagaa
caaattgagtttatgtcaaacgtgttttttgatttagaatttgctaaaatggaaagtggt
cagattattgttaatcaagtagttggaaaacgtaatctggatgagtcactagtttatcaa
cagaaggtagaagaaattactactcgaaaaaaattgttatactccaactacagcgagctt
catagttggatgaagtcaatgatggaaacatcaatttacccgaatgcggaggaacttgaa
aatggaaattaa
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