Lotus japonicus: Lj0g3v0053889.1
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Entry
Lj0g3v0053889.1 CDS
T04348
Symbol
Lj0g3v0053889.1
Name
(Kazusa) -
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lja
Lotus japonicus
Pathway
lja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lj0g3v0053889.1 (Lj0g3v0053889.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
Lj0g3v0053889.1 (Lj0g3v0053889.1)
03400 DNA repair and recombination proteins [BR:
lja03400
]
Lj0g3v0053889.1 (Lj0g3v0053889.1)
Enzymes [BR:
lja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lj0g3v0053889.1 (Lj0g3v0053889.1)
Transcription machinery [BR:
lja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lj0g3v0053889.1 (Lj0g3v0053889.1)
DNA repair and recombination proteins [BR:
lja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lj0g3v0053889.1 (Lj0g3v0053889.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Peptidase_M23
Motif
LinkDB
All DBs
AA seq
643 aa
AA seq
DB search
MEVFMAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSIS
LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
PNFSMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMS
ERILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSW
ICRLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPS
NGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKS
EQIIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWI
LSGNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISP
DTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRT
QSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFF
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggaggtttttatggcagaacgggccaatctagtctttcataataaagtaataggtgga
actgccataaaacgaattattagtagattaatagatcatttcggaatggcgtatacatca
catattctggatcaagtaaagactcttgggttccgtcaagctactacgacatctatttca
ttaggaattgatgaccttttaacaataccttctaagggatggttagtccaagatgctgaa
caacaaagtttgattttggaaaaacatcatcattatgggaatgtacatgcggtagaaaaa
ttacgtcaatccattgagatatggtatgctacaagtgaatatttgcgacaagaaatgaat
cccaattttagtatgactgacccctttaatccagtccatataatgtctttttcgggagct
aggggaaatgcatctcaagtgcaccaattagtaggtatgagaggattaatgtcggatccc
cagggccaaatgattgatttacccattcaaagcaatttacgtgaaggactttctttaaca
gaatatattatttcttgttatggagcccgcaagggggttgtggatactgctgtacgaaca
tcagatgctggatatcttacacggagacttgttgaagtggttcaacacattgttgtacgc
cgaacagattgcggtaccgttcgagggatttctgtaaatactcggaatagaatgatgtca
gaaagaattttgatacaaacattaattggtcgtgtattagcagacgatatatatataggg
tcgcgatgcattgtcgttagaaatcaagatattggaattggacttatcaatcgattcata
aactttcaaacacaaccaatatttatccgaaccccctttacctgtaggaatacgtcttgg
atctgtcgattatgttacgggcggagtcctattcatggaaacctggtcgaattgggagaa
gctgtaggtattatagccggccaatctattggagaacctggtactcaattaacattaaga
acttttcatactggcggagtcttcacgggtggtaccgccgaatatgtgcgatccccctcg
aatggtaaaataaaattcaatgagaattcggcttaccctacacgtacacgtcatggacat
cctgcctttttatgttatatagacttatatgtaactattgaaagtaacgatattatgcat
aacgtaattattccacccaaaagttttttattagttcaaaatgatcaatatgtaaaatct
gaacaaataattgccgagatccgtgcaggaacatatactttaaatttgaaagaaaaggtt
cgaaaacatattttttctgattcggaaggagaaatgcattggagtacaaatatatatcac
gtttctgagtttgcatatagtaatgtacatatcttaccaaaaacaagccatttgtggata
ttatcgggaaattcacacaagtctgatacagtttctttgtcacttcttaaggatcaagat
caaatgagcactcattcccttcctactgcaaaaagaaatacttcgaactttttagtaagt
aataatcaagtacgactatgtccggatcattgtcattttatgcatcctactatttccccc
gatacttcgaatttattagcaaaaaagcgaagaaatagattcattattccatttctattc
cgatcaattcgagaacgaaacaacgagctaatgcccgatatctcggttgaaatacctatc
gatggtattattcataaaaatagtattcttgcttatttcgatgatcctcaatacagaaca
cagagttcgggaattgcgaaatataaaactataggaattcattccatttttcaaaaagaa
gatttaattgagtatcgaggaataagggaatttaaaccaaaataccaaatcaaagtagat
cgatttttt
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integrated database retrieval system
