KEGG   Lotus japonicus: Lj0g3v0298839.1
Entry
Lj0g3v0298839.1   CDS       T04348                                 
Symbol
Lj0g3v0298839.1
Name
(Kazusa) -
  KO
K11098  small nuclear ribonucleoprotein F
Organism
lja  Lotus japonicus
Pathway
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
   03041 Spliceosome [BR:lja03041]
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
   03032 DNA replication proteins [BR:lja03032]
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     Lj0g3v0298839.1 (Lj0g3v0298839.1)
Spliceosome [BR:lja03041]
 Complex A
  U1 snRNP components
   Sm proteins
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
  U2 snRNP components
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
 Complex B
  U1 snRNP components
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
  U4/U6.U5 tri-snRNP components
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
 Complex C
  U2 snRNP components
    Lj0g3v0298839.1 (Lj0g3v0298839.1)
DNA replication proteins [BR:lja03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     Lj0g3v0298839.1 (Lj0g3v0298839.1)
SSDB
Motif
Pfam: LSM SM-ATX
LinkDB
AA seq 78 aa
MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
GEILIRCNNVLYLRGVPE
NT seq 234 nt   +upstreamnt  +downstreamnt
atggcgactataccagttaatcccaagcctttcctgaacaatttgactgggaaaccagtt
attgtgaaacttaagtggggaatggagtacaagggatatcttgtttcagttgattcctat
atgaacttgcagctggccaacactgaagagtacattgagggacagtttactggaaattta
ggagagatattaatcagatgcaacaatgtcctctaccttcgtggagtaccagaa

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