KEGG   Lotus japonicus: Lj3g3v3033290.1Help
Entry
Lj3g3v3033290.1   CDS       T04348                                 

Gene name
Lj3g3v3033290.1
Definition
(Kazusa) -
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lja  Lotus japonicus
Pathway
lja03030  DNA replication
lja03410  Base excision repair
lja03420  Nucleotide excision repair
lja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03410 Base excision repair
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03420 Nucleotide excision repair
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03430 Mismatch repair
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lja03032]
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03400 DNA repair and recombination proteins [BR:lja03400]
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
Enzymes [BR:lja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
DNA replication proteins [BR:lja03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
   NER (nucleotide excision repair)
    Other NER factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
   MMR (mismatch exicision repair)
    Other MMR factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
LinkDB All DBs
AA seq 776 aa AA seqDB search
MIHFRPYLSPPFLSHHRITAVKLFSLPFLTLPRRAMSKPPSAFDALMSGARAAAAKKKPP
PPSAASPKKRKSPHSSPAPAPTLNPNNLKTPETVQPPRDSVETVQPSSEEAVETVLQPAK
KICNSSGSLIAELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRI
VITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTE
SQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNH
IKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEE
AAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKF
QDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVL
DCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQENLKTR
REHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKR
SLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGT
GFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAA
VGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKHNQTDNQNDNEDD
NT seq 2334 nt NT seq  +upstreamnt  +downstreamnt
atgatccatttccgtccttacctctctcccccattcttatctcatcatcgaatcaccgcc
gtcaagcttttctctcttccctttctcaccctccctcgccgcgccatgtccaaaccaccc
tccgccttcgacgccctaatgtccggcgcacgcgccgccgccgccaagaagaaaccacct
ccaccttccgccgcatcccccaagaaacgaaaatcccctcactcctccccagcccccgcc
cccaccctaaaccctaacaacctcaaaacccccgaaaccgttcaaccgcctagggattca
gttgaaaccgttcaaccgtcatcggaagaagccgttgaaactgtgcttcaaccggcgaag
aagatttgcaacagcagcgggtctttgatcgccgagttgaaggagctggccccgaggctc
aagaagaagccgtcggagttcgatccgagtactgtggtttgctgggagaagggaaaaccc
gtgccgttcctgttcttgtgcttggcgtttgacatgattgacaaggagtcagggaggatt
gtgatcacggacattgcgtgcaaccttctgagaacggtcatacacgctacgccggaggat
cttgtgccggtggtctatttccttgcgaataggattgctccggcgcatgaagggttggaa
ttgggaattggtgatgcttccattatcaaggcgctcgcggagtcttgtggaaggactgag
tcgcagattaggaagctgaataaggatagaggtgatttgggattggtcgccaaagagtgc
cgttcatctcagtcaatgatgcggaagcctgatgcattgactataaggaaggttttcacg
atctttcgcctcattgccaaggaatctggaaaagacagtcaagagaagaaaaagaatcat
ataaagtctcttcttgttgctgcaactgactgtgaacctatatatctaattcgtttgtta
cagacaaagttgcgaattggattagctgaacaaactctcttagcttcattagggcaggct
gcagtgtacactgaagaacattctaaaccacctcctgaaattcagtctcctctagaagag
gctgcaaaaatcgttaaacaagtctattctgttcttcctgactatgacaaagtactgtct
tcactgcttaaggatggtgtgtggaaacttccaaagacatgtaaatttactcttggtgtt
cctgtcgggcctatgctttccaaaccaaccaagggtgtatctgaaattctgaataaattc
caggatgtagagtttacctgtgaatacaaatacgacggagagcgtgctcagatacattac
atggagaatggctcagttgaagtttacagcagaaatgcagaatggaatactggaaagttt
cctgatgttgttgctgcagtttcaaggttaaagaaaacaagtgtatcatcatttgttctt
gattgtgaagttgttgcatatgaccgtgcaaaacaaagaatccttccttttcaggtgctt
agtactcgggctcgcaaaaatgtagctgtgagtgacataaaggttgatgtttgcatattt
gcctttgatttgttgtatcttaatggtcaaatacttcttcaggaaaacttgaaaactcgt
agagagcatctctatgcctcttttgaggaagaatctggatattttcagtttgcaacagca
ataacatcaaatgatgttgaggagatacagaagtttcttgacaaagccattggtgcaagt
tctgagggattaatcattaaaacattaaatgaagatgctacatatgaaccttccaagcgg
tcactcaactggctaaaactgaagaaagattatatggataatataggagactcactagat
ttagttcctattgctgcttttcacggtcgtgggaaacgtacaggagtctatggtgccttt
ctccttgcttgctatgacaacagtaatgaagaatttcaaagtatttgtaagattggaact
ggattctctgaagatgttcttatagagcgttctaaaggcctccagactaaagtcattccg
aagccaaaggcctactatcggtatgcagaaacaataaatcctgatgtttggtttgaagcc
agtgaggtgtgggaggtgaaggctgcagacctgactattagccccgtttatcgagctgca
gtgggtattgtagattcaaacaagggcatatctcttcgatttccacgcctacttcgagta
cggcctgacaaagatcctgagcaggccacatcgtctgagcaggttgctgaaatgtataat
gctcagaaacacaatcaaacggacaaccaaaatgacaatgaagatgattgaatg

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