Lotus japonicus: Lj3g3v3033290.1 Help Entry Lj3g3v3033290.1   CDS       T04348                                  Symbol Lj3g3v3033290.1 Name (Kazusa) -   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism lja  Lotus japonicus Pathway lja03030   DNA replication lja03410   Base excision repair lja03420   Nucleotide excision repair lja03430   Mismatch repair Brite KEGG Orthology (KO) [BR:lja00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Lj3g3v3033290.1 (Lj3g3v3033290.1)    03410 Base excision repair     Lj3g3v3033290.1 (Lj3g3v3033290.1)    03420 Nucleotide excision repair     Lj3g3v3033290.1 (Lj3g3v3033290.1)    03430 Mismatch repair     Lj3g3v3033290.1 (Lj3g3v3033290.1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:lja03032]     Lj3g3v3033290.1 (Lj3g3v3033290.1)    03400 DNA repair and recombination proteins [BR:lja03400]     Lj3g3v3033290.1 (Lj3g3v3033290.1) Enzymes [BR:lja01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      Lj3g3v3033290.1 (Lj3g3v3033290.1)     6.5.1.6  DNA ligase (ATP or NAD+)      Lj3g3v3033290.1 (Lj3g3v3033290.1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      Lj3g3v3033290.1 (Lj3g3v3033290.1) DNA replication proteins [BR:lja03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     Lj3g3v3033290.1 (Lj3g3v3033290.1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      Lj3g3v3033290.1 (Lj3g3v3033290.1) DNA repair and recombination proteins [BR:lja03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      Lj3g3v3033290.1 (Lj3g3v3033290.1)    NER (nucleotide excision repair)     Other NER factors      Lj3g3v3033290.1 (Lj3g3v3033290.1)    MMR (mismatch excision repair)     Other MMR factors      Lj3g3v3033290.1 (Lj3g3v3033290.1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif LinkDB All DBs AA seq 776 aa AA seqDB search MIHFRPYLSPPFLSHHRITAVKLFSLPFLTLPRRAMSKPPSAFDALMSGARAAAAKKKPP PPSAASPKKRKSPHSSPAPAPTLNPNNLKTPETVQPPRDSVETVQPSSEEAVETVLQPAK KICNSSGSLIAELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRI VITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTE SQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNH IKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEE AAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKF QDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVL DCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQENLKTR REHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKR SLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGT GFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAA VGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKHNQTDNQNDNEDD NT seq 2334 nt NT seq  +upstreamnt  +downstreamnt atgatccatttccgtccttacctctctcccccattcttatctcatcatcgaatcaccgcc gtcaagcttttctctcttccctttctcaccctccctcgccgcgccatgtccaaaccaccc tccgccttcgacgccctaatgtccggcgcacgcgccgccgccgccaagaagaaaccacct ccaccttccgccgcatcccccaagaaacgaaaatcccctcactcctccccagcccccgcc cccaccctaaaccctaacaacctcaaaacccccgaaaccgttcaaccgcctagggattca gttgaaaccgttcaaccgtcatcggaagaagccgttgaaactgtgcttcaaccggcgaag aagatttgcaacagcagcgggtctttgatcgccgagttgaaggagctggccccgaggctc aagaagaagccgtcggagttcgatccgagtactgtggtttgctgggagaagggaaaaccc gtgccgttcctgttcttgtgcttggcgtttgacatgattgacaaggagtcagggaggatt gtgatcacggacattgcgtgcaaccttctgagaacggtcatacacgctacgccggaggat cttgtgccggtggtctatttccttgcgaataggattgctccggcgcatgaagggttggaa ttgggaattggtgatgcttccattatcaaggcgctcgcggagtcttgtggaaggactgag tcgcagattaggaagctgaataaggatagaggtgatttgggattggtcgccaaagagtgc cgttcatctcagtcaatgatgcggaagcctgatgcattgactataaggaaggttttcacg atctttcgcctcattgccaaggaatctggaaaagacagtcaagagaagaaaaagaatcat ataaagtctcttcttgttgctgcaactgactgtgaacctatatatctaattcgtttgtta cagacaaagttgcgaattggattagctgaacaaactctcttagcttcattagggcaggct gcagtgtacactgaagaacattctaaaccacctcctgaaattcagtctcctctagaagag gctgcaaaaatcgttaaacaagtctattctgttcttcctgactatgacaaagtactgtct tcactgcttaaggatggtgtgtggaaacttccaaagacatgtaaatttactcttggtgtt cctgtcgggcctatgctttccaaaccaaccaagggtgtatctgaaattctgaataaattc caggatgtagagtttacctgtgaatacaaatacgacggagagcgtgctcagatacattac atggagaatggctcagttgaagtttacagcagaaatgcagaatggaatactggaaagttt cctgatgttgttgctgcagtttcaaggttaaagaaaacaagtgtatcatcatttgttctt gattgtgaagttgttgcatatgaccgtgcaaaacaaagaatccttccttttcaggtgctt agtactcgggctcgcaaaaatgtagctgtgagtgacataaaggttgatgtttgcatattt gcctttgatttgttgtatcttaatggtcaaatacttcttcaggaaaacttgaaaactcgt agagagcatctctatgcctcttttgaggaagaatctggatattttcagtttgcaacagca ataacatcaaatgatgttgaggagatacagaagtttcttgacaaagccattggtgcaagt tctgagggattaatcattaaaacattaaatgaagatgctacatatgaaccttccaagcgg tcactcaactggctaaaactgaagaaagattatatggataatataggagactcactagat ttagttcctattgctgcttttcacggtcgtgggaaacgtacaggagtctatggtgccttt ctccttgcttgctatgacaacagtaatgaagaatttcaaagtatttgtaagattggaact ggattctctgaagatgttcttatagagcgttctaaaggcctccagactaaagtcattccg aagccaaaggcctactatcggtatgcagaaacaataaatcctgatgtttggtttgaagcc agtgaggtgtgggaggtgaaggctgcagacctgactattagccccgtttatcgagctgca gtgggtattgtagattcaaacaagggcatatctcttcgatttccacgcctacttcgagta cggcctgacaaagatcctgagcaggccacatcgtctgagcaggttgctgaaatgtataat gctcagaaacacaatcaaacggacaaccaaaatgacaatgaagatgattgaatg

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