Lactobacillus johnsonii N6.2: T285_03890
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Entry
T285_03890 CDS
T02941
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ljn
Lactobacillus johnsonii N6.2
Pathway
ljn03030
DNA replication
ljn03430
Mismatch repair
ljn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T285_03890 (polC)
03430 Mismatch repair
T285_03890 (polC)
03440 Homologous recombination
T285_03890 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljn03032
]
T285_03890 (polC)
03400 DNA repair and recombination proteins [BR:
ljn03400
]
T285_03890 (polC)
Enzymes [BR:
ljn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
T285_03890 (polC)
DNA replication proteins [BR:
ljn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
T285_03890 (polC)
DNA repair and recombination proteins [BR:
ljn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
T285_03890 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
RNase_H_2
HHH_3
Auto_anti-p27
DEDDh_C
T2SSK
zf-ribbon_3
Zn-ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
AHA97196
UniProt:
A0A7D9N5W6
LinkDB
All DBs
Position
790097..794395
Genome browser
AA seq
1432 aa
AA seq
DB search
MTKKNELFKKLLDQIKFPDKFEDNDIVQNGEIENVDVYANERKWKIHVFFDTPLDFETYR
SLNELIHETFEPFVNVELLVQTRDGSSKKLPAYWTYAIQNSTNLKPAVREFLQGQAPHLE
KEKWLIPTQNQVVNGLLSEQVLAELNKEFRRYGFFNIKFTTKVDETNIDENLRSLEQEQA
QHESAMQEFYEKQPAEPKKKMPVKSTRMGNKKVDKKAKFIQIKDLEDGSGNVAIEGHIFN
TDIHELKSGSVIFTGEITDYTDSISFKKFVSDKDQIDYLKGIKPGVWARMQGYAADDQYQ
HDVVFNIRNLELIEHKGREEKYEGEKKRVELHLHTNMSQLDATSTASDFIKTAKKFGQKA
IAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHALLVLNPTEMDYRDREYVIFDV
ETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDEMVGAADDE
KDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLHPEQTR
HTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNERFHEADLGKMNDYAKYGQVY
KRAKPSHMSVLALNQEGLKNMYKLVSLASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQG
DVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKE
LNKPVVATSDSHYVEPHEAIYRKILLAAQKGNPNRNKNLPDLHFYSTQEMLDAFSFLGED
VAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVE
DRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLA
PHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDGQDIPFATFLGFHGDKVPDI
DLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYGYVKHYEDENELHLRNAELD
RLAAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHDNI
LKFDILGHDDPTMIRMLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLG
VPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIGCRD
NIMMDLIHWGVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDWYIPSCLKIKYMFPK
AHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGM
DVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILAPFNAVPGLGDN
AAKQIVAARAEQKFLSKEDLATRGKVSQTIMEYFENNGVLEGMPDQNQLSLF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaaaagaacgaacttttcaaaaaactattagatcaaatcaagtttcctgataag
tttgaagataacgatattgtccaaaatggtgaaattgaaaacgtggatgtatacgctaat
gaaagaaagtggaaaatccacgttttttttgatacaccattagattttgaaacttatcgc
tctcttaatgaacttattcatgagacttttgaaccatttgtgaatgttgaattattagtt
caaacacgcgatggaagtagtaagaaactaccggcctactggacttatgccattcagaat
tcaactaacctaaaaccagctgttcgggaatttttacaaggacaagctcctcatttagaa
aaagaaaaatggctaattccaactcaaaaccaagtagtaaatggcttgctttcagaacaa
gttttagcagaactaaataaagaattcagacgttatggtttctttaatatcaagtttaca
acgaaagttgatgaaactaatattgatgaaaatttaagaagtctagaacaagagcaggct
cagcatgagtctgctatgcaagaattctatgaaaaacaaccggcagaacctaagaaaaaa
atgcctgttaagagcacaagaatgggcaacaaaaaggtcgataaaaaagctaaatttatt
caaattaaagacttggaagatggcagtggaaacgtagctattgaaggccatatttttaat
actgatattcatgaattaaaatctggaagtgtaatttttactggtgagattactgactat
acagattcaattagctttaaaaaatttgtttctgacaaagatcaaattgattatctaaag
ggaattaaacctggcgtttgggctagaatgcaaggttatgcagctgatgatcaatatcaa
catgacgttgtttttaatattcgaaacttagaattaattgaacataagggtcgagaagaa
aagtatgaaggagagaaaaagcgtgtagagttgcaccttcatacaaatatgagtcaattg
gacgcaactagtacggcgagtgactttatcaaaactgcgaaaaaatttggtcaaaaggca
attgcaattacggatcatgcagatgtgcaatctttcccagaagcttatcatactggtgca
agcgaaaaaatgaagattttatatggctatgaggccaatatgattgatgatcatgctttg
cttgtccttaatcctactgaaatggattatcgagatcgtgaatatgtgatttttgacgtt
gaaacaacaggactatcgtctgtttacgacaccattattgaaatcggtgcggtaaaaatg
aaaaatggtgaggtcctagaaagattcgatgaatttatcaatccacatcatcccttgagc
gatacaacgattaacttaacatcaattactgatgaaatggttggtgcagctgatgatgaa
aaagatgtaattaagaaatttaaagaattttatggtgatcgtcctctctgtggacataat
gttcaatttgatgttgggtttgtaaatgcggctttacgccgtgcaggtctagaagaaatt
acgcaacctgttgttgacacgcttgaagtttcaagacttttgcatcctgaacaaactcgc
cacacccttgattctttagctaagaaatacaatgttgttcttgaacatcatcaccgcgct
aatcaagatgccgaagctacaggatacttaatgtttaaattgctagatgcttttaatgaa
cgttttcatgaagcagatttaggcaaaatgaatgactatgctaaatatggtcaagtttat
aagcgagctaagccaagtcatatgagtgttcttgctttaaatcaagaaggactaaaaaat
atgtacaagcttgtatcgcttgcaagtactaaatatttctatcgtattccacgtacccca
aagtcggaattaagaaaatatcataaaggtttattatttggtagtgggtgctggcaaggc
gatgtattcatttcaatgatgcaaaaaggatatgatgaagctcgtgaaaaagcacgtttt
tatgattatcttgaagtccaaccgccagcagcttatcaaaccttaattgaagatgatcta
attaaagatgaagacgagctgcatgaaattattcaaaatatttataaattaggtaaagaa
ctaaataaaccagtagtagctaccagtgactcgcactatgttgaaccgcatgaagcaatt
tatcgtaaaattttattagcggctcaaaagggaaatcctaatcgcaataaaaatttaccg
gatttacatttttattcaacgcaggaaatgcttgatgcatttagctttttgggtgaagat
gtagctaaagaaattgtaattgataataccaataaattagccgatcaaattgaggaaatt
gctccgattaaaagtggactatatccacctcatattgaaaatgcggatcaagaaatgaag
gatttaacctataataaagcctacgaattatacggaaaacctttaccaaagattgtagaa
gatagaattgaacttgaattgaattctattatttcaaacggatatgcagttatttactta
atttctcaaaggcttgttgccaaatcaaataaagacggatatttagtagggtcacgtggg
tcagttggttctagtttagtagcgacgatgtctggaattacggaagtaaatcctttggct
ccgcactatcgttgtccgaattgcaagtattcaaaattctttgagaatggagaatatggg
tcaggctatgatttacctgacaaagagtgtccaaaatgtggaactccattagttaaagat
gggcaagatattccgtttgctactttcttaggattccatggagacaaggtgccggatatc
gatttaaacttctctggagactatcaaccagtagctcataactacattcgagttatgttt
ggtccagacaattcatttagagcggggacgattgcgactgttgctgataagactgcttat
gggtatgttaagcattatgaagatgaaaatgaactacatttaagaaatgctgagcttgat
cgtctagcagccggtgcttctggagtaaaaagaacaactggacaacacccagcaggtatt
gttgtagtgcctgatgatatggatatttatgactttactccagtccagtatccagcagat
gatttaagtgcagcttggcttacaactcactttgatttccattctatccatgataatatt
ttaaaatttgatattctgggtcacgatgatcctaccatgatcagaatgctacaggatcta
tccggagttgatccattaactattcctcctgatgatccgggagtaatgtctctcttctca
agtcctgaaattttaggtgttacccctgaacaaatccaatcaaaaacgggaacacttggt
gtaccagaatttggtacaaagtttgttagagggatgcttgaagaaacaaaaccaactact
ttctcagaattattgcaaatttctggcttatctcacggtactgatgtatggttaggaaat
gcagaagatttaattaataatgggacttgtaagttgaagaatgtgattggttgtcgtgat
aacatcatgatggacttgattcactggggtgtaaaaccagaagttgctttctttacaatg
gaatctgtacgacatggtagaggaattagcgatgaaaatatggaaatcttgaaaaagaac
gacaagattcctgattggtacattccctcatgtcttaagattaagtatatgttccctaaa
gcccatgctacagcctatatcctgatggcactgagaattgcttggtttaaagtatattat
ccagtaatttattatgcttcttacttctctgttcgtgctgacttgtttgatttggtagca
atgagtcacggcaagaatacagttaaagctgcaatgaaagaaattcaggataagggaatg
gatgtttctgcaaaagacaagtcattacttactgtacttgaaattgcaaatgaatgttta
gagcgtggaataaagattaagatggtagatgtaaacgaatctgaagccacagactttaag
attattgatgaccatacaatcttagcaccatttaatgctgttcctgggttaggtgacaat
gctgcaaagcaaattgtagctgcacgtgcggaacagaaatttctttcaaaagaagatctt
gccactcgcggcaaagtatcacaaacaattatggagtattttgaaaataatggtgttctt
gagggaatgcctgatcagaatcaattgtcactattttag
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integrated database retrieval system
