Lactococcus lactis subsp. lactis Il1403: L0323
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Entry
L0323 CDS
T00045
Symbol
vacB1
Name
(GenBank) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lla
Lactococcus lactis subsp. lactis Il1403
Pathway
lla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0323 (vacB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lla03019
]
L0323 (vacB1)
03016 Transfer RNA biogenesis [BR:
lla03016
]
L0323 (vacB1)
Enzymes [BR:
lla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L0323 (vacB1)
Messenger RNA biogenesis [BR:
lla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L0323 (vacB1)
Transfer RNA biogenesis [BR:
lla03016
]
Prokaryotic type
tRNA degradation factors
L0323 (vacB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AAK05040
UniProt:
Q9CH00
LinkDB
All DBs
Position
967019..969472
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AA seq
817 aa
AA seq
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MSIREVIMDYLENSSKKALSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLNFTAKGKV
ELAEKEEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNAN
ALKGTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEG
LIPENKAIVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEV
LDQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIAD
VSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISP
EGRVINYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMR
KRRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPF
IYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLL
RSMQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTPANILQKWED
KIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEEYEGIIASVTRFGMFIELENTI
EGLVHISTLKGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEIDFEYLPSE
LDLIDKAAKAKKKPDHKGRKKSNQSLKVKSVAPKSTDKSANKSKNGRRADEKFEFDKKKK
KSAKKPFYSKAAKGKFTDKKDNGKKFTDGRKKPHKRG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagtattagagaagtaatcatggactatcttgagaatagttcaaaaaaagcactgtca
gtagaagaattgtcagttgcgttacatatgaataaggctaaagattacaaagtatttgtc
aaaactttagcttcactagaagccgagcatttgcttaattttactgcaaaaggtaaagtt
gaactagccgaaaaagaagaggcaaaagttgtcatcagcggaattttccgggccaatgca
gctggctttggttttgtcagcattgatgctgaagaaccagacgtttttgtcgcaagaggc
caaacggctttcgcccttgatggtgacgaagtttttattgaaattgataaaaatgccaat
gcgctcaaaggaacttctgctgaagggcatgttgtcgaaatcattcgccatgacgtccat
caggttgttggaacttttgtagctttgaatgatgatgaaaaagagcaaacaggactgatt
ggttttgttaaatctcggaataaaaaaatcccttatcgtgtttatttagaaaatgaaggt
ttaattcctgaaaataaagcgattgttcgtgttgaaatcactcattatccagataaggaa
tttccacagacaatgcaaggattagtcactgaaattattggtcaagcagatgaccaagga
attgacgttttggaagttttggcttcaatggatattgtttctgaatttccaaaagaagtt
ttagaccaagctgaagctgttccagaagaagttccagaaaatgaaattgtgggacgagtc
gattatcgtaatgaaatcacttttacaattgatggagcagacgcaaaagaccttgatgat
gctgtgcatgctaaacgtttggaaaatggaaactatgaattaggagtacatattgcggat
gtttcacactacgtcactgaaaattctccattagataaagaagcttacgaacgtggaaca
tctgtttatgtgacggatcgagtagttccaatgctgcccgaacgtctctctaatggaatt
tgttcattgaatcctcgaatcaatcgtctaacgcagtcttgtgtcatggaaattagtcct
gaaggtcgagtgatcaactatcaaatttctcaatcaattattaaaacgacagaaagaatg
acttatgatgccgttaatcaaatgattgcaggagatgaggcagcacttgaaaactatgct
aaaattgcagattctgtaaaaataatggttgaacttcaccatattttagaagccatgcgt
aaaagacgcggggccattgattttgatacagtagaagcgaaaatcattgtcaatgaaaaa
ggactgccaattgaaattagaaaacgaacacgtggcattgctgagcgaatgattgaatca
ttcatgcttgaagcgaatgaaacagttgcgacacatttcgaagcgcatggcctgcctttt
atctatcggattcacgaacaaccaaaagcagatagattgcaacgttttattgattttgca
gcaacttttggaatgcagattgaaggaacttcaaatggtattgatcagaaggttttacaa
gctttcatgaagaaaattaaaggtcagcctggcgaaatggtcttgtcaactatgttgtta
cggagtatgcagcaagctcgttattcagaaaacaatgagggtcactttggtttagctgcg
gaaaattatacgcactttacttcaccaattcgtcgttatcccgatttgttggttcatcga
ttgattcgtgaaattggtgagggaaaaacaccagctaatattttacaaaaatgggaagat
aaaattcctgaaattgcagaacattctagtcatcgtgaacgccgggcggttgatgctgaa
cgtgaagttgaaaaaatgaaaaaagccgaattcatggaagaacatgtgggtgaagagtat
gaagggattattgcttcagttacccgttttggaatgtttattgaacttgaaaatacgatt
gaaggtttagttcatatttcaacccttaaaggtgattattttaattatcaagaacgaatg
ttggcgcttattggcgaacgaagtggacttacctttaaaattggtcagcctattaaaata
aaagttgtcaaagctgatagaatgactggggagattgattttgaatatctaccttcagaa
ttagatttgattgataaagcagcgaaagcgaagaaaaaacctgatcataaaggtcgcaaa
aaatcaaatcaatctcttaaggttaaatcagtagcgccaaaatctactgacaaatctgct
aataaatcaaaaaatggcagaagagctgacgagaaatttgaatttgataaaaagaaaaag
aaatcagccaagaaaccattttacagtaaagctgctaagggcaaatttactgacaaaaaa
gataatggcaaaaaatttactgacggaagaaaaaagccacataaaagaggctaa
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