Lutra lutra (Eurasian river otter): 125085052
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Entry
125085052 CDS
T08100
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125085052
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125085052
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125085052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125085052
NCBI-ProteinID:
XP_047559131
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Position
14:32142378..32283592
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AA seq
741 aa
AA seq
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MVAERAHKAAAAGARGHGEPSAPAAVALAVAPAERCARLPSPGSCGLLALALCSLALSLL
AHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREALPKTSPGCHC
PPGPPGPAGRPGIPGDKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGHPGPKGEMGLTGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLA
PPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGPPGLPGPMGPSGLPGPPGPKGDPG
IQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKGEKGAAGSPGLLGLLGQ
KGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGPAGPPGRQGDKGEPGAPGNQGPA
GPKGTKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGVQGQKGEIGL
PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKSGPTGMKGEDGHAGSPGEKGEKGEMGQAGP
PGLDGPTGEKGEPGGQGRPGATGVPGPIGLPGFTGEKGEPGEKGEPGVEVPGPPGPEGPP
GPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGAAGLDGRPGPPGTPGPIGVP
GPAGPKGERGSKGDLGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgtgcccacaaagcggcagcagccggtgcccgcggccacggggagccc
agcgcgcccgcggcggtggcgctggcggtggcgccggcggagcgctgcgcacggctgccg
agcccgggatcctgcgggctgctggcgctggccctgtgctcgctggcgctcagcctgctc
gcccactttcggaccgccgagctgcaggcccgggtgctgcgcctggaagccgagcgtggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggatgagaaatgg
aagctccactctcggaggcgccgggaggccctcccgaagacgtctccagggtgccactgc
ccgccaggacctcctggtcctgctggaagacctggcatcccgggggacaaaggtgccatt
ggaatgcctggacgtgtgggagtaaagggccaaccaggcgagaagggggccccaggagat
gccggcatgtctatcatcggcccccgaggccccccaggtcagccgggcactcgaggtttc
cctggatttccgggtcccattgggctcgatggcaaaccgggccaccccggacccaaaggg
gagatgggcctgacgggtccccgaggacagccaggacctcaaggacaaaaaggagaaaag
ggtcaatgtggagagtacccacatcggctgctgcctctcctcaattcagtgcgactggct
ccgcccccagtcataaaaagacggaccttccagggggaacagggccaggccggcattcaa
ggcccaccagggccaccaggcccccctggaccgagcggacccctggggcccccaggactg
ccagggcccatggggccatcaggcttacccgggcctcctggaccaaagggagacccagga
atccagggctatcacggccggaagggagaacggggcatgccagggatgccgggcaaacat
ggagcaaagggagctcctggaattgctgtggctgggatgaagggtgagcctgggacccca
ggagccaagggtgaaaagggggcggcaggctcccctgggctacttggcctcctggggcag
aagggagaaaaaggcgatgccggcaactccattggagggggcagaggggagcccggcccc
ccagggctgcccgggcccccagggccaaagggagaagctggcgttgatggcccggccggc
cccccaggacggcaaggagacaagggggagcctggagcacctggaaaccagggaccagcc
ggccccaagggcaccaagggggaaccagggaaaggagagatggtggactacaatggaaat
atcaacgaggctctccaggagatccgaacgctggccttgatgggaccccccggtcttccc
ggacaaatcggcccacccggagcaccaggggtccaaggccagaagggggagatcggactg
ccaggccctccaggacacgatggagaaaagggacctcgaggcaagccaggagacatgggc
cctcctggtccccaaggccccccaggaaagtctgggcctacaggaatgaagggagaagac
ggacacgcaggaagcccgggagagaagggggagaaaggggagatgggacaggcgggccca
ccgggtctagacggcccaactggggagaaaggagaaccaggtggccaagggaggcccgga
gcaacaggagtccccggccctatcgggctcccgggatttacaggagagaaaggagagccc
ggggagaagggggagccaggagtggaggttcctgggcctccagggccagaggggcccccc
ggacctccggggctccaaggtgttcccggaccaaagggggaagcaggactagatggagca
aaaggagagaagggtgtccagggcgagaaaggagatcgagggccgctgggattacccgga
gctgcaggtttggacggcaggcctgggccaccgggtactccaggaccaatcggagtccca
ggcccagcgggaccaaagggcgagaggggcagcaaaggcgacttggggatgacaggacca
acaggagcggctgggcttcctggtttacatggaccacccggggacaaaggaaaccggggg
gagagggggaagaaaggctctagagggcctaaaggggataagggagaccaaggagcgcct
ggattagatgccccctgcccgttgggcgaagatggcttgccagtccagggctgttggaac
aagtga
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