Lysobacter luteus: LYB30171_00404
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Entry
LYB30171_00404 CDS
T08395
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
llz
Lysobacter luteus
Pathway
llz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
llz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LYB30171_00404 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llz03400
]
LYB30171_00404 (ligD)
Enzymes [BR:
llz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LYB30171_00404 (ligD)
DNA repair and recombination proteins [BR:
llz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LYB30171_00404 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAG4969039
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Position
1:436498..438978
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AA seq
826 aa
AA seq
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MSLREYDRKRRFDQTPEPSSDSPGRRGHRPIFVIQLHHASVRHYDFRLEMDGALKSWSVP
KGPSLRVGEKRLAVEVEDHPLSYADFEGDIPEGHYGAGHVDLFDRGVWSCNGDPLESLAA
GKIDFVLHGERLGGGWKLVRTAKPASKPQWLLIKRDDEHAADTEADELTDAPTPKGWKGR
RPSGPAKKAAARAKPRKAAAPAPRTRRRRIDWKARAMALDGAKPLRGTTEVDPQLATLRE
TPPAGEGWLHELKWDGYRMLARIDDGKATLRSRNGLDWTADYPDIVAALESLGAGDASLD
GELIALDAKGRNSFADLQRTIEGSASAVLRYVVFDLPTLAGVDLTRTRLDERKALLEALL
ADVGRDDLLAYSQHIVGHGDQVFAASKGQEMEGIISKAVDAHYTPGRSRTWLKIKHAESD
EFIVVGFTAPKRSRVGFGALLMATREAGRLKYVGRVGTGFDDARLRSMTTRLQKLARKEP
TLVLPGHIPFAPRDVTWVEPRLVAEVAFRGWGKEGLLRQASFQRLREDKEASDVGEQDTF
KLTSPDKLIYPAEKITKQQVADYYRAIAPQLLPEVARRPLSMLRCPDGLKGQCFFQKHHA
DTLGPNVHAVPIREKGVGGLEDYVYIEDVEGLLDLVQMNVLELHPWGSRVEDVEHPDRLV
FDLDPGEGVEWPALKAAARDIRARLEEIGMRGFLRLSGGKGLHVVVPIAPGPSWSEAKAF
CEAFADALATQAPDRYVATASKAKRKGVIFIDWLRNGRGATSVASWSLRARAGAGVAVPL
RWDELGRTRSGADYDLTRALRRAAGLRKDPWEGWDKATRQKLAGFD
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcgcgagtacgaccgcaagcgccgcttcgaccagacgcccgagccgtccagc
gacagcccgggccggcgtgggcaccggccgatcttcgtcatccagttgcaccacgcgagc
gtgcggcactacgacttccgcctcgagatggacggcgcgctcaagagctggtcggtgccg
aaggggccttcattgcgtgtcggcgagaaacggctcgcggtcgaggtggaagaccacccg
ctgtcgtatgccgacttcgagggtgacatccccgagggccattacggcgccggccacgtc
gacctgttcgaccgcggggtgtggagctgcaacggcgacccgctggagtcacttgccgcg
ggcaagatcgacttcgtcctgcacggcgaaaggctcggcggtggctggaagctggtgcgc
acggccaagccggccagcaagccgcaatggctgctgatcaagcgcgatgacgagcatgcc
gccgacaccgaagccgacgaactgaccgatgcccccacgccgaaaggatggaaaggccgc
cggccgtcggggccggcgaagaaggcggccgcccgggcgaagccccgcaaggccgcggca
ccggcccccaggacccgccgccgccggatcgactggaaggcccgggcgatggcgctggac
ggcgccaaaccattgcgcggaaccaccgaggtggacccgcagctcgccaccctgcgcgag
acgccgccggccggcgagggctggctgcatgaactcaaatgggacggctaccggatgctg
gcgcggatcgatgacggcaaggccaccctgcgctcgcgcaacggactggactggaccgcc
gactaccccgatatcgtggccgcactggaatcgcttggtgccggtgacgcgagcctggac
ggcgagctgatcgcactcgatgcaaaggggcgcaacagcttcgccgacctgcaacgcacc
atcgagggcagtgcgagcgcggtcctgcgctatgtcgtgttcgacctgccgacgctggcc
ggcgtcgacctgacgcgcacccggctcgacgagcgcaaggcgctgctggaagcgctgctg
gccgacgtcggccgggacgacttgctcgcctacagccagcacatcgtcgggcatggcgac
caggtcttcgcggccagcaagggccaggagatggaagggatcatcagcaaggcggtcgac
gcgcactacaccccggggcgctcgcggacctggctgaagatcaagcacgccgagagcgac
gagtttatcgtggtcggcttcaccgcacccaagcggtcgcgggtgggctttggcgcgttg
ctgatggccacgcgggaggccgggcgcctgaagtacgtcggtcgggtgggcaccggtttc
gacgatgcgcggctgcgctcgatgaccacacggttgcaaaagctcgcgcgcaaggaaccg
accctggtgctgccggggcacatcccgttcgcgccgcgcgacgtgacctgggtcgagcct
cggctggtggccgaggtggcgttccgcggctgggggaaggaggggcttttgcggcaggcg
agtttccagcgcctgcgcgaggacaaggaggcgagcgacgtgggcgagcaggacactttc
aagctgaccagcccggacaagctgatctacccggccgagaagatcaccaagcagcaggtc
gccgactactaccgcgcgatcgcaccgcaactgttgcccgaggtggcgcggcggccgctg
tcgatgctgcgttgtccggacggcctcaagggccagtgcttcttccagaagcaccatgcc
gacacgctcggtcccaacgtgcacgcggtgccgatccgggagaagggcgtcggcggcctg
gaggactacgtctacatcgaggatgtcgagggcctgctcgacctggtgcagatgaacgtg
ctcgagctgcatccgtggggctcgcgggtggaggacgtcgagcaccccgaccggctggtg
ttcgacctggacccgggcgagggcgtggaatggccggcgctcaaggccgccgcccgcgac
atccgtgcgcggctggaggagatcggcatgcgcgggttcctgcgcctgtccggcggcaag
ggcctgcacgtggtggtgccgatcgcgccggggcccagttggagcgaagccaaggccttc
tgcgaggcctttgccgatgcactggcgacgcaggcgccggaccgctacgtcgccacggcg
tcgaaagccaagcgcaagggcgtgatcttcatcgactggctgcgcaatggccgcggcgcg
accagcgtcgccagctggtcgctgcgcgcgcgggcgggcgccggcgtggccgtgccgctc
cgctgggacgagcttggccgtaccaggtcgggcgcagactacgacctgacccgcgcgcta
cggcgcgccgctggcttgcgcaaggacccgtgggagggttgggacaaggccacccggcag
aagcttgccggcttcgactga
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