Listeria monocytogenes J1-220 (serotype 4b): LM1816_14060
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Entry
LM1816_14060 CDS
T02801
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmoz
Listeria monocytogenes J1-220 (serotype 4b)
Pathway
lmoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM1816_14060 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmoz03019
]
LM1816_14060 (rnr)
03016 Transfer RNA biogenesis [BR:
lmoz03016
]
LM1816_14060 (rnr)
Enzymes [BR:
lmoz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LM1816_14060 (rnr)
Messenger RNA biogenesis [BR:
lmoz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LM1816_14060 (rnr)
Transfer RNA biogenesis [BR:
lmoz03016
]
Prokaryotic type
tRNA degradation factors
LM1816_14060 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
EGF36571
LinkDB
All DBs
Position
complement(2615819..2618200)
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AA seq
793 aa
AA seq
DB search
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDV
VDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLSNGNWKLGVHIADVTHYVTEGSP
LDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIF
ESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVVVDAREIDFALRSEGKPGPVSDK
QKRQREKPIDKTRNFKSNQKKGRNKRRAGKSEDVKPKSERKEDEWHTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgcctgataaa
acatttgcgcttgaagatttggaaatagaaatagctttaaacaatgcggatgactttaaa
ttaatggtgaaagctttagtgaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacatttcgcgcgcatgaa
cgaggttttggctttgttctcccggaagaaaaagaaatggacgatatttttatcccacca
aatgaagtaaaagatgcaatgaatggcgatttagtttttgcaacgattacgaaacgtaaa
ggcgataatttggcagaggggacgattaagaaaattgtcgaacggaagacaacgcaaatc
gtcggaacttatatggaagacttagctggtactccaattgtgatgccagatgacaagcga
ctttttggtgaagtggaaattgatttagaagacggcttaaaaccagttgatgggcataaa
gttatcgttgaattgacggaatatgcaactgggcatgcgcgtgcaagaggggttgttaaa
tcaatcatcggtcaccgtaatgatccaggagtggatattttatcgattattcataaacac
ggtatttcaatcgggttcccggaagaagtaatggagcaggtaagtaaagcgccggatgtg
gtggatgattcggatattggtaaccgtcgtgatcttcgtgaccaaatgattattacgatt
gacggggcagacgctaaagatttagatgatgctgtaactgttacgcaactttcgaacggt
aactggaagctgggcgttcatattgcggatgtaacgcattatgtgacagaaggctcgccg
cttgatgtcgaagcgcaagaacgtggaacgagtgtttatttggttgaccgcgtaattccg
atgttgccacataaactatcgaacggaatttgctcgcttaacccacaagtagatcgtttt
actatgagttgtgaaatggaaatcgatgaagaaggtcatgtggttaatcacgaaattttt
gaaagtattattaaaacaacagaacgtatgacgtatacggatgtaaatgatattttagtt
gaaaaggacgaagctttacgggaaaaatatgcgccaattgttccaatgcttgaaaagatg
caacatttggccgaaatacttcgtcgtaaacgtgaaaaacgtggcgcgattgattttgac
tttaaagaagcacgtgtagttgttgatgaagacggtcatccagaagcagtcgttatgcgc
gaacgttcagcgggagagcatttgattgaagaatttatgcttgctgccaatgaaacagtt
gcagagcatttccactggatggatgtaccatttatttaccgtatccatgaagatccaaaa
gaagataaattagcgcggttctttgaatttattacgaactttggtttgattgtgaagggg
actgctaacgatattcacccagctgctttacaacaagtactagaagaagtaaaaggtaaa
ccagaagagatggttgtttcgactgttatgctgcgttcgatgcaacaagcgaagtatgac
acagtaagcgccggacactttggtttgtctactgatttttatacacatttcacgtcacca
attcgtcggtacccggacttgattgttcacaggttgattagagagtatttaattaacggg
gatgttcgtccggaaacgttagaaaaacgcgctgaggagcttcctgagattgctgaacac
agctcgaaaatggagcgccgtgccgttgaagcagagcgcgaaacagacgaactgaagaaa
acggaatttatggtcgacaaagtgggcgaacgtttcatcggaatcattagttcggtaacc
aattttggcttatttatcgaacttccaactacgattgaaggtttagttcatgtgagcgca
atgaaaggcgattacttcaaattccaccaaaatcaattagcgatgattggcgaaagaaca
ggccaaatttatcgtattggtgatgaagtggaagtcgaagtaaccaaagtagtcgtggat
gctcgtgaaatcgattttgcgcttcgtagtgaaggtaaaccaggtccagtgagcgataaa
caaaaacgccaacgcgaaaaaccgattgataaaacaagaaatttcaagagtaaccagaaa
aaaggtcgtaacaaacgtagagctggtaaatcagaagacgtgaaaccaaaatcagaacgt
aaagaagacgaatggcatacaaaacctaaaaagaaaaagaagaaaaaacctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag
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