Lagopus muta (rock ptarmigan): 125689934
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Entry
125689934 CDS
T09141
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125689934 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125689934 (DDX3X)
03041 Spliceosome [BR:
lmut03041
]
125689934 (DDX3X)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125689934 (DDX3X)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125689934 (DDX3X)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125689934 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
125689934 (DDX3X)
Spliceosome [BR:
lmut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125689934 (DDX3X)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125689934 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
125689934
NCBI-ProteinID:
XP_048793690
LinkDB
All DBs
Position
1:complement(111154728..111173933)
Genome browser
AA seq
652 aa
AA seq
DB search
MSHVAVENALSLDQQFSGLDLNSSDSQSEGTATSKGRYIPPHLRNREASKQGFDSGGWSS
SRDKDAYSSFGARSDRGAKSSFFDRGNGSRGGRYEERGRGSDYDRSGFGRFDRGGNSRWC
DKSDEDDWSKPLPPSERLEQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFSDVDMG
EIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPG
DALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ
QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD
TMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKR
SFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFR
SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER
NINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKSSRFSGGFGARDYRTSSG
AGSSSFNSSRSTSSRSGGSGSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtggaaaatgccctcagtctagaccagcagttttctggtctagac
ttgaattcctcagactcccagagtgaaggaaccgctacaagcaaaggcagatacattcct
cctcacttaaggaacagggaagcttccaaacagggttttgatagcggtggctggagttct
agcagagacaaggatgcatacagcagctttggtgcgcggtccgaccgtggagcaaaatca
agcttctttgaccgtggaaatggatcaagaggaggaaggtatgaagagcgtggaagaggt
agcgactatgataggagtggcttcggtagatttgaccgtggtggaaatagccgttggtgt
gacaaatctgatgaagatgactggtcaaagcctcttcccccaagtgaacgcctggaacaa
gagctcttttcaggaagcaatactggcattaactttgagaaatacgatgatattcctgtt
gaagcaacaggcagcaattgtcctccacatattgaaagtttcagtgatgttgatatggga
gaaattattatgggaaacattgagctcacacgttacactcgtcctactccagtccagaaa
catgcaatacctattattaaagagaagagagacttgatggcctgtgctcagacagggtct
gggaaaactgctgcgtttcttctaccaatattgagccagatctatgcagatggacctggt
gatgccttgagagctatgaaggagaacggaaggtatggacgccgtaagcaatatccaatc
tcactggtcttagctccaactagagaactggctgtgcagatctatgaggaggccaggaag
tttgcataccgttccagagttcgtccctgtgttgtgtatggcggtgcagacattgggcaa
caaatacgtgacttagaacgtggatgtcacttgcttgtagcaactccaggtcgactggtt
gatatgatggagaggggaaagattggactggatttttgcaaatacctagtgcttgatgaa
gccgatagaatgctcgacatgggtttcgaacctcagattagacgaattgttgaacaagat
acaatgccgccaaagggggttcgtcataccatgatgttcagtgctactttccccaaggaa
atccagatgcttgctcgtgacttccttgatgaatatatcttcctggctgttggcagagta
ggttctacatctgagaatatcacacagaaagtggtctgggtggaagagttggacaaacga
tcatttctgcttgacctgctaaatgccacaggcaaggattctttgactctggtgtttgtg
gaaactaaaaagggagcagatgctcttgaggacttcctctaccatgaaggatatgcttgt
acaagtatacatggagatcgttctcagagagaccgagaggaagcactccatcagttccgt
tcgggcaagagcccaattcttgtagccacagccgtagcagcaagaggactggatatatca
aatgtaaagcacgtcataaactttgacttgccaagtgacattgaagaatatgtgcaccgt
attggtcgtacaggccgtgtaggaaaccttggtcttgccacctcgttcttcaatgagaga
aatataaacatcaccaaggatttacttgatcttcttgttgaggctaagcaagaagttcca
tcttggctggaaaacatggcttacgaacagcatcacaaaggaggtggcagccgtgggcga
tctaagagcagtaggtttagtggaggatttggtgccagagactaccgaacaagcagcggc
gctggcagcagcagctttaacagcagtcgatcaaccagcagccgtagtggaggaagtggc
agcagaggatttggaggtggtggttatggaggcttctacaacagcgatggatatggagga
aactataactcccagggggttgactggtggggcaactga
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