Lagopus muta (rock ptarmigan): 125693397
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Entry
125693397 CDS
T09141
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125693397
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125693397
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125693397
NCBI-ProteinID:
XP_048801266
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All DBs
Position
5:41369347..41425612
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AA seq
664 aa
AA seq
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MGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGYPGQK
GEMGATGPRGQPGPPGQKGEKGQCTEYSHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGI
QGPPGPPGPPGPAGPAGPEGTPGQPGPIGPPGRAGEPGKPGRDGKGLPGPPGAKGDPGIQ
GYPGRKGEAGMSGLPGAHGLPGATGPKGEKGDTGIKGERGMPGLPGRHGMKGAPGIATAG
MKGEPGTPGEKGEPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGPKGEKGNGENALVGS
KGEPGPPGLPGPPGPKGEAGDVGAAGSRGEKGERGTPGEQGPMGPRGPKGEPGKDEMMDY
DGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGEMG
PPGPHGLPGKDGPPGIKGEPGQIGVAGEKGHKGEPGQAGSPGLDGPTGEKGERGDQGMPG
PPGLPGPIGLPGLTGEKGQPGERGDKGNPGESMSGPPGPQGPPGPPGLQGLPGPKGEAGI
DGMKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVSGPAGPKGERGSKGDPGV
VGPMGPAGLPGLQGLPGDKGIRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQG
CWNK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggggattcctggacggccgggactaaaagggcaacctggagagaagggcgctccagga
gaagcaggcatgtctatcattgggccccgtggtccacccggacagcctggaacaagaggt
tttcctggattcccgggtcctattggcttggatggcaaaccgggttatcctggacagaag
ggagagatgggtgccacaggtcccaggggacagcccggacccccaggacaaaaaggagaa
aagggtcagtgcacagagtactcccacaggctgttgcctctcctcaattcagtgcggctg
gctccacctccggtcataaagagacgcactttccagggtgaacaaggacaagcaggaatc
caaggtcctccagggccacccggcccgccggggcccgctggaccagctggacccgaggga
accccaggacagcccggaccaattgggccacctggcagagctggggaacctgggaagcct
ggcagagatggaaagggcttacctgggcctcctggagcaaagggagaccctgggattcaa
ggataccctggcagaaagggcgaggcgggcatgtcaggcctgcctggtgcgcatggcctc
cctggagctactggccccaagggtgaaaaaggggacactggcataaagggagagagaggc
atgccagggctgccaggaagacatggcatgaagggtgctcctggaattgccacggcaggg
atgaagggtgagcctgggactccaggagaaaagggagagcctggagtcccagggaggatg
ggccccccaggtttgccagggaaaagggggcagcggggtgagaagggccgagctggtgat
cctgggctccctggcccgaagggagagaagggaaatggtgagaatgccttggtgggaagc
aaaggggaacctggccctcctggtctgcctgggccccctggaccaaagggagaagctggt
gacgttggtgctgcaggatcacggggggaaaagggagaacgtggtacaccaggagagcag
ggacccatgggacctaggggtcccaaaggagagcctggaaaggatgaaatgatggactac
gatggtaacatcagtgaagctctccaggaaatacgaaccttggccttgatgggaccgcca
ggacttccaggtgtggctggacctccagggccaccaggacagaagggtgaaattggctta
ccaggtcctccaggccatgatggagaaaagggaccacgaggcaagccaggagaaatgggc
ccccctggacctcatggactgccaggaaaggatggaccacctggaataaagggagagcca
ggccagattggggtcgcaggagaaaaggggcataaaggagagccaggacaagcaggctca
ccaggtcttgatggccccactggagagaaaggagaacgaggtgaccaagggatgccagga
ccaccaggattgccgggtcccattggacttccaggattgacaggagagaagggtcagcct
ggggagcgtggagacaaaggaaatccaggagaatcgatgtctggcccccccggacctcaa
ggcccaccaggacctccaggtcttcagggccttccaggaccaaagggggaagcagggatt
gatggaatgaaaggagagaagggtgtccagggtgaaaaaggagacagagggccactggga
ttacccggtgcttcaggtttagacggcaggcctggaccaccgggtactccaggaccaatt
ggggtttcgggaccagcaggaccaaaaggagaaaggggtagtaaaggagatcctggagtt
gtaggaccaatgggaccagcaggacttcctggtttacaaggtctgccaggtgacaaagga
atccggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaa
ggagcgcctggattagatgcaccctgtccgttgggagaagacggccttccagttcaaggc
tgctggaataagtga
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