Listeria monocytogenes 08-5923 (serotype 1/2a): LM5923_0294
Help
Entry
LM5923_0294 CDS
T01164
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmy
Listeria monocytogenes 08-5923 (serotype 1/2a)
Brite
KEGG Orthology (KO) [BR:
lmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmy03016
]
LM5923_0294
Enzymes [BR:
lmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LM5923_0294
Transfer RNA biogenesis [BR:
lmy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LM5923_0294
Prokaryotic type
tRNA splicing ligases
LM5923_0294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
SRP_TPR_like
Motif
Other DBs
NCBI-ProteinID:
ADB70140
LinkDB
All DBs
Position
289412..290590
Genome browser
AA seq
392 aa
AA seq
DB search
MLTLKGKYNEAKVFTDNVDDNTIGEIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTI
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDQFDLEG
VVAPIHLGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNHYLNDMEIAQKF
AARNRYIMAETILKAMKWNKAVVSAFDCVHNYIDIDNRMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttttacagataatgtggacgac
aataccatcggggaaattattacgttgtgtaatcaaccgtttgcgaaggatagtaaaatt
cgcatcatgcccgacacgcacggtggtaaaggctgtgtgattggaacgacaatgacaatt
caagataaaattgtaccaaatttggttggagtggacatcggttgcggactgtatgtagtg
aagctaaaacctggcaagttaaaaatggattttgataagctggataaagttattcgcgaa
cgggtgccatctggaagcaaaacgcacgataagcctgtggatcaatttgatttggaaggt
gtagttgcgccaattcatctcggctgggcagctagaagtatagggacgcttggtggcggg
aaccattttattgaggtgaatcaaggctctgacggtatttaccttgtaatccatagtgga
agtcgggtgcttggtaaagaaatcgcggaatatcaccaagaggtagcttataaaagatta
gacatattgcgtaaagaattaaaattagatgcaactgctgcgaaaaaacgtggcaattta
gaaatggctaataacttgaacggtgagcgagagcaagtgaaattggattatgacttatcc
tatgtgacgggctctgatttaaaccattatttaaatgacatggaaattgcacaaaaattt
gcagcgcgtaatcgttacatcatggcagaaactattttaaaagcgatgaagtggaataag
gcagttgtttcggcgtttgattgtgtgcataattacattgatatcgacaaccgcatgctt
agaaaaggtgcgacatctgctcagcttggggaacaaattatcgtgccgcttaatatgcgc
gatggcagcattcttgcaactgggaaaggaaatgcagattggaattactcggcgccacac
ggggcaggcaggatgctaagtcgctccaaagcgaaagcgcaaatcagtttagaaagctat
caggcagcaatgaaagacgtttggactacttctgtttctaaaaaaacaattgatgaagct
ccaaaagcctataaatcagctaaacaattacttgctgatgtagaagatacgatggagatt
caagaaataattaaacctttatacaatttcaaagcatga
DBGET
integrated database retrieval system
