Lepisosteus oculatus (spotted gar): 107077349
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Entry
107077349 CDS
T07349
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
loc00536
]
107077349
Glycosaminoglycan binding proteins [BR:
loc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107077349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107077349
NCBI-ProteinID:
XP_015202400
Ensembl:
ENSLOCG00000009521
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Position
LG5:complement(18699610..18835227)
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AA seq
772 aa
AA seq
DB search
MESDQNWQVSPPSIAGRSCKEHPYKKRSLRNCKDLSAVAVCSALSLLSLGVCILAYLRTS
ELQARVLNLEKERDTHVSAWISLDQMEPVTLGRLDQILEEKLAAHLPRVREAREVPHSCV
CPPGPPGARGKRGRNGDPGPPGPPGRAGFPGDKGAMGIPGRMGLMGEPGEKGAPGEPGMS
IIGPRGPPGQPGSRGFPGFPGPIGLDGKPGEKGLKGDMGSRGPKGSQGEPGPKGEKGACG
DYSHRELPVKTLAALRSNQILVLKMLPITVRNLHPMSPLILKRFKQGDKGEPGILGPPGP
PGPPGAPGPEGPSGMPGKPGEPGKPGKDPKNMPGMKGEPGIPGLPGQKGDAGEPGPLGLE
GPKGSKGDEGSKGERGMPGMPGKQGVKGEPGFSGAPGSKGQAGIPGIPGKRGYRGEKGDP
GTAADGMKGESGPPGPQGPEGPKGDKGDQGSKGENGSEGPSGPRGPPGQKGEPGKSESFD
YNGNFNEKLQGPPGPPGPPGSPGVKGEVGLPGPPGLDGEKGPRGKPGDPGPVGPAGPEGP
KGENGLLGFPGPKGEKGETGPAGSPGLDGPTGEKGDAGPPGPIGLSGSLGQKGESGQKGE
KGDMVSGPPGPPGVQGPVGPAGPPGLSGPKGEPGIDGTKGVKGDVGQKGDKGDRGPLGLP
GAHGLDGRPGPVGLLGPAGVPGPAGPKGERGDKGDAGAPGPIGPPGIPGLQGPQGLKGNR
GERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQTPFQLAKK
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgatcagaactggcaagtatctcccccgtctatcgcggggaggtcatgcaaa
gagcatccttacaaaaagcggtccttgaggaattgcaaagacctgtctgcagtagccgtc
tgcagcgctctgtcgttgctgtccctgggagtttgcattttggcttacctgaggacttcg
gagctgcaggcaagggttttaaatctggaaaaggaaagagacacgcatgtctctgcctgg
atctcactcgaccaaatggaaccagtaacgttaggcagactcgatcagattttagaagag
aaactggctgcccacttgcccagggtacgtgaagcccgagaagtgccccacagctgtgtc
tgcccaccaggccctccaggagcaaggggaaaaagaggtcgcaatggtgatccaggtcct
cctggcccccctggaagagctggctttccgggtgacaaaggagcaatgggaattcctgga
agaatggggttaatgggcgagcctggtgaaaagggagcaccaggggagccgggaatgtcc
atcattggcccacgtggacctccaggccaaccaggatcgaggggttttccaggatttccg
ggtccaattggtttggatggaaagccaggagaaaagggactgaaaggagatatggggtca
cgggggcctaaaggaagccaaggtgagcctggtccaaaaggggaaaagggagcatgtgga
gattactctcatagggagctcccagtgaaaacattagctgcgctacgctccaatcagatc
ctggtcctcaagatgttgcctatcaccgttcgcaacctgcatccaatgagccctttaatc
ctaaagcgcttcaagcagggcgacaagggagagccaggaatcctgggaccccctggccca
cctggacctcctggggccccaggaccagaaggtcccagtgggatgccgggaaaacctgga
gaaccaggaaagcccggaaaagatcctaagaacatgccaggaatgaagggtgaaccaggg
attccaggcttgccaggacagaagggagatgctggtgagccaggccctctaggtcttgaa
ggtccaaagggatcgaagggagatgaaggttccaagggagaaaggggaatgcccgggatg
cctgggaaacaaggagtgaagggagagccaggtttttctggagcacctggaagtaagggt
caagctggaatccctggtattcctggcaagagaggttataggggggaaaagggtgaccct
ggcacagcagctgatggaatgaaaggggagtcaggtcctccgggaccacagggccctgaa
gggcctaagggtgataaaggagaccagggatccaagggtgaaaatggatcagagggacca
tctggaccaagaggtcctccaggtcagaagggggagcctgggaaatcagaaagctttgac
tacaatggaaacttcaatgagaagctgcagggtccccctggtcccccagggcctccagga
tccccaggtgtgaagggtgaagtaggattacctggcccaccgggtcttgatggtgaaaag
ggcccccgagggaaaccaggagatccagggcccgtggggcctgcaggccctgagggccct
aagggagagaacggactcctgggcttccctggacctaaaggagagaaaggagagacaggc
cccgctggatcgccaggtttggatggtcccactggagagaaaggggatgccggtccacca
ggtccaataggattgtcgggctcactgggtcaaaaaggtgaatctggccagaaaggggag
aagggagatatggtctctggacctcctgggcccccaggagttcaaggaccagttggccct
gcgggacctcctggactgtcagggccaaagggggagccaggcattgatggcaccaaggga
gttaagggagatgtgggacaaaagggagataaaggagacagagggcctctcggactgcct
ggtgctcatggtttagacggcaggcctggcccagtgggtcttctagggccagccggagtt
ccagggccagcaggaccaaagggagagaggggggacaagggagacgcaggtgctccagga
ccaatagggcctccaggcatccctggtttacaaggaccacaaggactaaaagggaaccgg
ggggagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagca
cctggattagatgcaccctgtccgttgggagatgatggcttgccagttccaggatgctgg
aataaaggtcaaacaccttttcagctggcaaagaagtag
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