Paucilactobacillus oligofermentans: LACOL_0741
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Entry
LACOL_0741 CDS
T06755
Name
(GenBank) Putative DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lol
Paucilactobacillus oligofermentans
Pathway
lol03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LACOL_0741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lol03400
]
LACOL_0741
Enzymes [BR:
lol01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LACOL_0741
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LACOL_0741
DNA repair and recombination proteins [BR:
lol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LACOL_0741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
zf-dskA_traR
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
CUS26049
UniProt:
A0A0R1RHH7
LinkDB
All DBs
Position
I:774699..775532
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AA seq
277 aa
AA seq
DB search
MPELPEVETVRRGLIKIAKGRKIIGIDVNYPQTITNDIESFKQALIGQTIEDFNRRGKYL
LFRFSNDLTMISHLRMEGKYFELPEGEVPRKHTHVIFHLDNQTQLCYNDTRKFGRMTLVD
TGKELEYAGLKTIGPEPTDEDFTLDYFREILHKGRREIKPFLLDQKGVAGLGNIYVDEVL
WMSKIHPEERANKLNDQQIILLRKSIINEIEVATKHHGTTVHSYTNAFGHAGDFQNELHA
YGRVGEPCERCGNNLVKIKVAQRGTTFCPHCQQLSEE
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaaacggttcgccggggattaattaaaattgctaaggga
cgcaaaattattggaattgatgtgaattatccacaaacaattactaatgatattgagtct
tttaaacaggccttgattggtcaaaccattgaagattttaaccgccgtggtaaatattta
ttatttagatttagtaatgatctgacgatgatttctcatttacgaatggaaggtaaatat
tttgagttacctgaaggtgaagtgcctcgtaaacatacgcacgtgatcttccatttagat
aatcagactcaactttgttataacgatacaagaaaatttggtcgaatgacgttagttgat
accggtaaagagttagaatatgccggtttaaaaactattggaccagaaccgacggatgaa
gattttactttagattactttagagaaattttgcataagggtcggcgtgagattaagcca
tttttacttgaccaaaaaggcgtagccggtcttggtaatatttatgttgatgaagttctt
tggatgagtaaaattcatcctgaagaacgtgctaataagcttaatgatcagcaaataata
cttttacgcaaaagtattattaatgaaattgaagttgcaaccaaacatcatgggacaacc
gtgcattcatatacgaatgcctttggtcatgcaggtgattttcaaaatgagttacatgcc
tatggtcgtgtaggagaaccatgtgaacgttgtggtaataacttagtgaagattaaggtg
gcacaacggggaacaaccttctgtccacattgtcaacaacttagtgaggaataa
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