Limosilactobacillus oris: AYI71_11160
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Entry
AYI71_11160 CDS
T04391
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lor
Limosilactobacillus oris
Pathway
lor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYI71_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lor03021
]
AYI71_11160
03400 DNA repair and recombination proteins [BR:
lor03400
]
AYI71_11160
Enzymes [BR:
lor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYI71_11160
Transcription machinery [BR:
lor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYI71_11160
DNA repair and recombination proteins [BR:
lor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYI71_11160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMS09261
LinkDB
All DBs
Position
2264605..2268252
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNNFESMEIGLASPMKIRSWSYGEVTKPETINYRTLKPEKDGLFDERIFGPTKDFEC
ACGRYKRARYNKRVCERCGVEVTSAKVRRERMGHIELAAPASHIWYFKGIPSRMGLVLDM
SPRELEEVIYFASYVVLDAGDTGLEKKQLLSEPRYRELKEEYGNRFTAEMGAEAIQKLLA
DVDLAKKATELKAVLKEATGQKRTRAVRRLDILEAFLKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSMKMNQMGLPVP
MAMELFKPFIIHELTKRNLATNVKAAKRMIDKRDEKVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKAMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVAPSQDMVIGNYYMTTEDKAREGEGMIFKDTNEARMAYRNGYVALQTRVGVL
TSSFDKKPFTAEQRQKIMVTSVGKLLFNNIMPEDYTYINEPTADNLQNGVPDKYFLEPGE
DIHAYLENAPLVPPFKKGFLSDIIADVYKIYKVTVTSQLLDRIKDLGYYESTISGLTVGI
ADVTDLKEKPEIIEKAHKQVTLVTKQFRRGLITDNERYERVIGIWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPSGKIMELPILSNFREGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLEVTAITNGNEMIEPLY
DRILGRYTMKSVFNPETGEKIVGKNVLLNEEMAQKIIDAGVQRVTIRSAFTCNTEHGVCE
RCYGRNAATGDQVEAGEAIGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VESRNPKGKATISEVTGQVVSIEENPAEQTKDVTIKGETDTRTYTLPITARMRVAEGDDI
HRGRAINEGSIDPKEMIRVRDVLSTETYLLSEVQKVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDVLPGELLDISQFRDANYQTLISGGIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMGAYRNIKPKEVSVNTGATDGA
ITSIREMEEQLKDQD
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgattgacgtcaataattttgaaagtatggagatcggtctggcttccccaatgaagatc
cggagttggtcttacggtgaggttaccaagccggaaacgatcaactaccgaactttaaag
ccagaaaaagacggtctctttgatgaacgaatcttcggcccgaccaaggactttgaatgt
gcctgtggtcgctacaagcgggcgcgttacaacaagcgggtctgtgagcgttgtggggtt
gaagtaacctctgccaaggtccgccgggaacggatgggtcacattgaactggcggcccct
gcttctcacatctggtacttcaaggggatcccgagccggatggggctggtcttggacatg
agcccacgggaactggaagaagtaatctactttgcttcttacgtcgttttagacgccggg
gacacgggactggaaaagaagcaattgctttccgaaccacgttaccgggaactcaaggaa
gaatatggcaaccgttttaccgctgagatgggggccgaggcgatccaaaagctactggcc
gacgtagacctggccaagaaagcaaccgaattaaaggcggtcttaaaggaagcaactggg
caaaagcggacccgcgcggttcggcgcctggacatcttggaagccttcctcaagtccggg
aacaagcctgaatggatggtgatggacgtaattccggttatgccacctgacttacggccg
atggttcaactggaaggtggccgctttgccacttccgacttgaacgacttgtaccggcgg
gtcattaaccggaacaaccggttgaagcgcctgttagaattaaacgctccgggcatcatc
gttcaaaacgaaaagcggatgctccaagaagccgttgacgccctgattgataacggtcgc
cgtggccgtccggttgccggtcctggtaaccgtccgctcaagtccttgtcccacttactt
aaggggaagcaaggacggttccgtcaaaacctgctcgggaagcgggtcgactactctggt
cgttccgttatcgatgttggtccatccatgaagatgaaccaaatggggttgccggttcca
atggcgatggaactcttcaagccatttatcattcacgaactgaccaagcggaacctggct
accaacgttaaggcagccaagcggatgatcgacaagcgtgacgaaaaggtcttcgatgtc
ttagaagacgtgatcaaggaacaccctgttctcttgaaccgcgcccctaccctgcaccgg
ttagggatccaagccttcgaaccaatcctggtttccgggaaggccatgcgtttgcaccca
ctggtttgtgccgcttacaacgccgacttcgacggggaccagatggccatccacgtacca
ctgtccgatgaagcccaggccgaagcgcgtctgttaatgttagccgctcaccacatcctt
tcacctcgtgacggggaaccaatcgtggccccatcccaggatatggttatcggtaactac
tacatgacgactgaagacaaggcccgtgaaggggaaggcatgatctttaaggacaccaac
gaagcccggatggcctaccgtaacggttacgtggccttacaaacccgggttggggtgctg
acttcttcctttgacaagaagccgttcaccgctgaacaacgccaaaagatcatggtgacc
tcggttgggaagttgctcttcaacaacatcatgcctgaagattacacttacattaacgaa
ccgaccgccgacaacctgcaaaacggggttccggacaagtacttcttggaacctggtgaa
gacattcacgcctacttagaaaacgcgccgctggtgccgccgtttaagaagggcttcttg
tcggacatcattgccgatgtttacaagatctacaaggtgaccgtcacctcccaacttctt
gaccggatcaaggaccttggttactacgaatccacgatttccgggttaaccgtcgggatc
gccgacgtgaccgacttaaaggaaaagccggaaatcatcgaaaaggcgcacaagcaagtg
accctggttacgaagcaattccgccgtggtttgatcaccgacaacgaacgttacgaacgg
gtcattgggatctggaacgatgccaaggatgaagttcaaaacaagctgatcgaacacatg
gatatccacaacccaatcaacatgatgtccgactctggggcccgggggaacatctccaac
tttacccagctggccggaatgcgtgggttgatggcttccccatccgggaagatcatggaa
ctgccgatcctttctaacttccgggaaggcctttccgtcttggaaatgtttatctcttcc
cacggggcacggaaggggatgaccgacacggccttgaagaccgccaactctggttacttg
acccggcggctggttgacgtggcccaagatgtgatcgttcgcgaaaaggactgtggcacc
gaccgtggtctggaagtgaccgccatcactaacgggaacgaaatgatcgaaccgttatac
gaccggattttgggtcgttacacgatgaagtccgtctttaatccggaaaccggggaaaag
atcgtcggtaaaaacgtcctcttgaacgaagagatggcgcaaaagattatcgatgcgggc
gttcaaagggtgacgattcgctccgccttcacttgcaacaccgaacacggggtttgtgaa
cgttgttacggacgcaacgccgctaccggggaccaagtggaagccggggaagcaatcggg
acggtggccgcacagtcaatcggtgaaccagggacccagctgacgctgcggaacttccac
accggtggggtggccggtaacgacgacatcacccaagggcttccacgtatccaagaaatt
gtggaatcacggaacccgaaagggaaggccacgatctccgaagttactggtcaggtggtt
tccatcgaagaaaacccagctgaacaaactaaggacgttacgatcaagggtgaaaccgac
acgcggacttacaccctgccgatcacggcccggatgcgggtggccgaaggtgatgatatt
caccgtggtcgcgccatcaacgaagggtcaattgatccaaaggaaatgattcgggttcgc
gacgtcttgtccacggaaacctacctgctctccgaagtgcaaaaggtttatcgtatgcag
gggattgacctgctcgacaagcacgttgaaatcatgattcgccaaatgatgcgtaaggtg
cgggtgatggatcctggtgatactgatgttttaccgggtgaactgttggacattagccaa
ttccgcgatgctaactaccaaaccttgatttccgggggaattccggccactgcccggcca
gttatcctcgggatcactaaggcggctcttgaaactaacagtttcctttcggccgcttcc
ttccaagaaacgacgcgtgtccttaccgacgccgccatccggggcaagaatgacccgctg
gtggggctcaaggaaaacgttattatcgggaagatcattccagccggaacggggatgggt
gcttaccgcaacatcaagcccaaggaagtcagtgtcaacactggcgcaaccgatggggcc
attacctccatccgcgaaatggaagaacaactaaaggatcaagactaa
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integrated database retrieval system
